BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031667
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22578.1| retrotransposon protein, putative, unclassified [...    51   3e-12
gb|ABA93730.1| retrotransposon protein, putative, unclassified [...    49   4e-12
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group...    48   5e-12
gb|ABA94321.1| retrotransposon protein, putative, unclassified [...    48   5e-12
gb|ABA95797.1| retrotransposon protein, putative, unclassified [...    47   6e-11

>gb|ABG22578.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 836

 Score = 50.8 bits (120), Expect(2) = 3e-12
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +1

Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306
           RAF+VKDL PLRYFLGI+ ARS  GI FS RK
Sbjct: 554 RAFEVKDLGPLRYFLGIEIARSSKGIVFSQRK 585



 Score = 45.4 bits (106), Expect(2) = 3e-12
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110
           LKQSPRAW + F   + G+GY QC  DH  F K  G
Sbjct: 487 LKQSPRAWFDRFRRAVCGMGYSQCNGDHMVFYKHRG 522


>gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 656

 Score = 48.5 bits (114), Expect(2) = 4e-12
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +3

Query: 3   LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHGLTL 119
           LKQSPRAW + F H +  +GY QC  DHT F K  G  +
Sbjct: 296 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTNI 334



 Score = 47.4 bits (111), Expect(2) = 4e-12
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306
           +AF+VKDL PLRYFLGI+ ARS  GI  S RK
Sbjct: 363 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 394


>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711651|gb|ABF99446.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1393

 Score = 48.1 bits (113), Expect(2) = 5e-12
 Identities = 20/36 (55%), Positives = 23/36 (63%)
 Frame = +3

Query: 3    LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110
            LKQSPRAW + F H +  +GY QC  DHT F K  G
Sbjct: 1033 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRG 1068



 Score = 47.4 bits (111), Expect(2) = 5e-12
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 211  RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306
            +AF+VKDL PLRYFLGI+ ARS  GI  S RK
Sbjct: 1100 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 1131


>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1133

 Score = 48.1 bits (113), Expect(2) = 5e-12
 Identities = 20/36 (55%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110
           LKQSPRAW + F H +  +GY QC  DHT F K  G
Sbjct: 892 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTIFYKHRG 927



 Score = 47.4 bits (111), Expect(2) = 5e-12
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 211  RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306
            +AF+VKDL PLRYFLGI+ ARS  GI  S RK
Sbjct: 959  KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 990


>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1588

 Score = 47.0 bits (110), Expect(2) = 6e-11
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = +1

Query: 214  AFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306
            AF+VKDL PLRYFLGI+ ARS  GI  S RK
Sbjct: 1296 AFEVKDLGPLRYFLGIEVARSSKGIVLSQRK 1326



 Score = 44.7 bits (104), Expect(2) = 6e-11
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +3

Query: 3    LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110
            LKQSPRAW + F   +  +GY QC  DHT F +  G
Sbjct: 1228 LKQSPRAWFDRFRRALCNMGYSQCNGDHTVFYRHRG 1263