BLASTX nr result
ID: Coptis24_contig00031667
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00031667 (310 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABG22578.1| retrotransposon protein, putative, unclassified [... 51 3e-12 gb|ABA93730.1| retrotransposon protein, putative, unclassified [... 49 4e-12 gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group... 48 5e-12 gb|ABA94321.1| retrotransposon protein, putative, unclassified [... 48 5e-12 gb|ABA95797.1| retrotransposon protein, putative, unclassified [... 47 6e-11 >gb|ABG22578.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 836 Score = 50.8 bits (120), Expect(2) = 3e-12 Identities = 24/32 (75%), Positives = 26/32 (81%) Frame = +1 Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306 RAF+VKDL PLRYFLGI+ ARS GI FS RK Sbjct: 554 RAFEVKDLGPLRYFLGIEIARSSKGIVFSQRK 585 Score = 45.4 bits (106), Expect(2) = 3e-12 Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = +3 Query: 3 LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110 LKQSPRAW + F + G+GY QC DH F K G Sbjct: 487 LKQSPRAWFDRFRRAVCGMGYSQCNGDHMVFYKHRG 522 >gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 656 Score = 48.5 bits (114), Expect(2) = 4e-12 Identities = 20/39 (51%), Positives = 24/39 (61%) Frame = +3 Query: 3 LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHGLTL 119 LKQSPRAW + F H + +GY QC DHT F K G + Sbjct: 296 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRGTNI 334 Score = 47.4 bits (111), Expect(2) = 4e-12 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = +1 Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306 +AF+VKDL PLRYFLGI+ ARS GI S RK Sbjct: 363 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 394 >gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group] gi|108711651|gb|ABF99446.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1393 Score = 48.1 bits (113), Expect(2) = 5e-12 Identities = 20/36 (55%), Positives = 23/36 (63%) Frame = +3 Query: 3 LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110 LKQSPRAW + F H + +GY QC DHT F K G Sbjct: 1033 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTVFYKHRG 1068 Score = 47.4 bits (111), Expect(2) = 5e-12 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = +1 Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306 +AF+VKDL PLRYFLGI+ ARS GI S RK Sbjct: 1100 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 1131 >gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1133 Score = 48.1 bits (113), Expect(2) = 5e-12 Identities = 20/36 (55%), Positives = 23/36 (63%) Frame = +3 Query: 3 LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110 LKQSPRAW + F H + +GY QC DHT F K G Sbjct: 892 LKQSPRAWFDRFRHAVCDMGYSQCNGDHTIFYKHRG 927 Score = 47.4 bits (111), Expect(2) = 5e-12 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = +1 Query: 211 RAFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306 +AF+VKDL PLRYFLGI+ ARS GI S RK Sbjct: 959 KAFEVKDLGPLRYFLGIEIARSSKGIVLSQRK 990 >gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1588 Score = 47.0 bits (110), Expect(2) = 6e-11 Identities = 22/31 (70%), Positives = 24/31 (77%) Frame = +1 Query: 214 AFDVKDLSPLRYFLGIKTARSKAGIYFSNRK 306 AF+VKDL PLRYFLGI+ ARS GI S RK Sbjct: 1296 AFEVKDLGPLRYFLGIEVARSSKGIVLSQRK 1326 Score = 44.7 bits (104), Expect(2) = 6e-11 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = +3 Query: 3 LKQSPRAWSEHFNHFMLGVGYCQCQADHTHFVKPHG 110 LKQSPRAW + F + +GY QC DHT F + G Sbjct: 1228 LKQSPRAWFDRFRRALCNMGYSQCNGDHTVFYRHRG 1263