BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031598
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...    78   8e-13
ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...    75   7e-12
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...    74   1e-11
ref|XP_002525148.1| pentatricopeptide repeat-containing protein,...    72   6e-11
ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10

>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 33/59 (55%), Positives = 51/59 (86%)
 Frame = +2

Query: 2   EGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 178
           EGCLE +E++L GKMV++M ++GFIPYI+VRQ+V++ L S+G+ + AC VRQ+L+++RS
Sbjct: 285 EGCLEVREYILAGKMVMRMTDRGFIPYIKVRQKVVERLISIGEWKLACTVRQRLSELRS 343


>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 33/59 (55%), Positives = 46/59 (77%)
 Frame = +2

Query: 2   EGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 178
           EGCLEK+E+VL  K+   M E+GFIPYIRVRQ++++GLAS+ +   AC VRQ+ A ++S
Sbjct: 284 EGCLEKREYVLAAKVATGMTERGFIPYIRVRQKIIEGLASIDEWNLACAVRQRFAALKS 342


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 30/59 (50%), Positives = 51/59 (86%)
 Frame = +2

Query: 2   EGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 178
           EGCLE +E++L GK+V++M ++GFIPYI+VRQ+V++ L ++G+ + AC VRQ+++++RS
Sbjct: 285 EGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINIGEWKLACTVRQRVSELRS 343


>ref|XP_002525148.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535607|gb|EEF37275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 354

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 31/59 (52%), Positives = 45/59 (76%)
 Frame = +2

Query: 2   EGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 178
           EGCLE+KE++L  K+V++M +KGFIPYI+VRQ+V++GL        AC VRQ+ A++ S
Sbjct: 296 EGCLERKEYILAAKVVMRMTDKGFIPYIKVRQKVVEGLIDADAWNIACTVRQRFAELSS 354


>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/59 (57%), Positives = 46/59 (77%)
 Frame = +2

Query: 2   EGCLEKKEFVLGGKMVIQMVEKGFIPYIRVRQRVLDGLASVGKRQSACLVRQKLADVRS 178
           EGCL   EFVL GK+V+ M  +GFIPYI VRQ+V++GLA++G+ + A  VRQ+ AD+RS
Sbjct: 285 EGCLACHEFVLAGKVVMGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343