BLASTX nr result
ID: Coptis24_contig00031564
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00031564
(850 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi... 308 8e-82
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi... 263 5e-68
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi... 263 5e-68
emb|CBI19766.3| unnamed protein product [Vitis vinifera] 241 2e-61
ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ... 238 1e-60
>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Vitis vinifera]
Length = 1545
Score = 308 bits (790), Expect = 8e-82
Identities = 152/275 (55%), Positives = 205/275 (74%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N LID YAKSGNI+YA+ +F+ + S+D+ISWN+L+AGYVLHGC + AL++F+QM +G K
Sbjct: 567 NCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVK 626
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
P+RGTF+SII A+SL+GMV++G SSM DYQI PG EH+SAM+DLLGRS +LGEA+
Sbjct: 627 PSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIE 686
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNIYRLLVQLYGLSGR 542
F+E+M IE D IW ALLTAS++HGNI LA+RA ECL E+ P + +I++ ++Q+Y LSG+
Sbjct: 687 FIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGK 746
Query: 543 SDDAVKVRKPQKWSGLEYSTGCSWIEMKNTVHTIGTGERSMTNSKRIYSQLARIAEEIKI 722
+D K+RK +K S + GCSWIE KN VHT +RS ++S + +A ++K
Sbjct: 747 FEDVSKLRKSEKRSETKQPLGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIENVARKVK- 805
Query: 723 VLPYPHDTQLCIEDEEREEKCGFHSEKLALSFALI 827
P HD +L IE+EE+EE G HSEKLAL+FALI
Sbjct: 806 -APDQHD-RLFIEEEEKEEIGGVHSEKLALAFALI 838
Score = 67.4 bits (163), Expect = 4e-09
Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+++ YAK G + AR FE++ RD +SWN+++ GY G ++ +FE+M+ G +
Sbjct: 224 NSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIE 283
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
P T+ +I +YS +G + + M ++I P +++M+ +++R +A+
Sbjct: 284 PGLVTWNILINSYSQSGKCDDAMELMKKM-ESFRIVPDVFTWTSMISGFAQNNRRSQALE 342
Query: 363 FVEEM---GIEQD----------YAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNI 503
EM GIE + A AL +H ++A+ + E L +
Sbjct: 343 LFREMLLAGIEPNGVTVTSGISACASLKALKKGMELH-SVAVKIGCVEDLL--------V 393
Query: 504 YRLLVQLYGLSGRSDDAVKV 563
L+ +Y SG +DA +V
Sbjct: 394 GNSLIDMYSKSGELEDARRV 413
Score = 59.3 bits (142), Expect = 1e-06
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+LID Y+KSG + AR VF+ + +DV +WN+++ GY G +A ++F +M
Sbjct: 395 NSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVP 454
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAV- 359
PN T+ ++I Y G +Q M D I + +++++ ++ +A+
Sbjct: 455 PNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALG 514
Query: 360 ------------NFVEEMGIEQDYAIWDALLTASRVHG-----NIALAVRAAECLFEMGP 488
N V + I A A +HG N+ + A CL +
Sbjct: 515 IFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYA 574
Query: 489 KSVNIYRLLVQLYGLSGR 542
KS NI G+S +
Sbjct: 575 KSGNIVYAQTIFQGISSK 592
>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 263 bits (671), Expect = 5e-68
Identities = 136/281 (48%), Positives = 192/281 (68%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+L+D YAKSGNI Y+R VF + S+D+I+WN+++AGY+LHGC + A +F+QMR LG +
Sbjct: 562 NSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIR 621
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
PNRGT SII AY +AGMV++G SS+T ++QI P +HY AM+DL GRS RL +A+
Sbjct: 622 PNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIE 681
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNIYRLLVQLYGLSGR 542
F+E+M IE D +IW +LLTA R HGN+ LAV AA+ L E+ P + IYRLLVQ Y L G+
Sbjct: 682 FIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGK 741
Query: 543 SDDAVKVRKPQKWSGLEYSTGCSWIEMKNTVHTIGTGERSMTNSKRIYSQLARIAEEIKI 722
+ +KVRK K S ++ T W+E++N VH TG++S + + + + I ++K
Sbjct: 742 FEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQSKLDV--LNTWIKSIEGKVK- 798
Query: 723 VLPYPHDTQLCIEDEEREEKC-GFHSEKLALSFALISSPYS 842
+ + QL IE+EE+EEK GFH EK A +F LI S ++
Sbjct: 799 --KFNNHHQLSIEEEEKEEKIGGFHCEKFAFAFGLIGSSHT 837
Score = 60.8 bits (146), Expect = 4e-07
Identities = 35/125 (28%), Positives = 65/125 (52%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+++ A+ K G + AR F ++ RD +SWN ++AGY G +EA + + M G K
Sbjct: 219 NSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFK 278
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
P T+ +I +YS G + L ++P +++M+ +S R+ +A++
Sbjct: 279 PGLVTYNIMIASYSQLGDCDL-VIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALD 337
Query: 363 FVEEM 377
F ++M
Sbjct: 338 FFKKM 342
>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
[Cucumis sativus]
Length = 1463
Score = 263 bits (671), Expect = 5e-68
Identities = 136/281 (48%), Positives = 192/281 (68%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+L+D YAKSGNI Y+R VF + S+D+I+WN+++AGY+LHGC + A +F+QMR LG +
Sbjct: 562 NSLVDTYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIR 621
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
PNRGT SII AY +AGMV++G SS+T ++QI P +HY AM+DL GRS RL +A+
Sbjct: 622 PNRGTLASIIHAYGIAGMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIE 681
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNIYRLLVQLYGLSGR 542
F+E+M IE D +IW +LLTA R HGN+ LAV AA+ L E+ P + IYRLLVQ Y L G+
Sbjct: 682 FIEDMPIEPDVSIWTSLLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGK 741
Query: 543 SDDAVKVRKPQKWSGLEYSTGCSWIEMKNTVHTIGTGERSMTNSKRIYSQLARIAEEIKI 722
+ +KVRK K S ++ T W+E++N VH TG++S + + + + I ++K
Sbjct: 742 FEQTLKVRKLGKESAMKKCTAQCWVEVRNKVHLFVTGDQSKLDV--LNTWIKSIEGKVK- 798
Query: 723 VLPYPHDTQLCIEDEEREEKC-GFHSEKLALSFALISSPYS 842
+ + QL IE+EE+EEK GFH EK A +F LI S ++
Sbjct: 799 --KFNNHHQLSIEEEEKEEKIGGFHCEKFAFAFGLIGSSHT 837
Score = 60.8 bits (146), Expect = 4e-07
Identities = 35/125 (28%), Positives = 65/125 (52%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+++ A+ K G + AR F ++ RD +SWN ++AGY G +EA + + M G K
Sbjct: 219 NSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGFK 278
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
P T+ +I +YS G + L ++P +++M+ +S R+ +A++
Sbjct: 279 PGLVTYNIMIASYSQLGDCDL-VIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALD 337
Query: 363 FVEEM 377
F ++M
Sbjct: 338 FFKKM 342
>emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 241 bits (614), Expect = 2e-61
Identities = 110/184 (59%), Positives = 149/184 (80%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N LID YAKSGNI+YA+ +F+ + S+D+ISWN+L+AGYVLHGC + AL++F+QM +G K
Sbjct: 221 NCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVK 280
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
P+RGTF+SII A+SL+GMV++G SSM DYQI PG EH+SAM+DLLGRS +LGEA+
Sbjct: 281 PSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIE 340
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNIYRLLVQLYGLSGR 542
F+E+M IE D IW ALLTAS++HGNI LA+RA ECL E+ P + +I++ ++Q+Y LSG+
Sbjct: 341 FIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGK 400
Query: 543 SDDA 554
+DA
Sbjct: 401 FEDA 404
Score = 59.3 bits (142), Expect = 1e-06
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+LID Y+KSG + AR VF+ + +DV +WN+++ GY G +A ++F +M
Sbjct: 49 NSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVP 108
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAV- 359
PN T+ ++I Y G +Q M D I + +++++ ++ +A+
Sbjct: 109 PNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALG 168
Query: 360 ------------NFVEEMGIEQDYAIWDALLTASRVHG-----NIALAVRAAECLFEMGP 488
N V + I A A +HG N+ + A CL +
Sbjct: 169 IFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYA 228
Query: 489 KSVNIYRLLVQLYGLSGR 542
KS NI G+S +
Sbjct: 229 KSGNIVYAQTIFQGISSK 246
>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517031|gb|AES98654.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 887
Score = 238 bits (607), Expect = 1e-60
Identities = 124/275 (45%), Positives = 174/275 (63%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N LID+YAKSGN++Y++ +F L +D +SWN++++ YVLHGC AL++F QMR G +
Sbjct: 565 NLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESALDLFYQMRKQGLQ 624
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
PNRGTF SI+LAY AGMV++G S S +T DY + G EHYSAM+ LLGRS +L EA++
Sbjct: 625 PNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYLLGRSGKLAEALD 684
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAECLFEMGPKSVNIYRLLVQLYGLSGR 542
F++ M IE + ++W ALLTA R+H N +AV A + + E P + LL Q Y L G+
Sbjct: 685 FIQSMPIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITRHLLSQAYSLCGK 744
Query: 543 SDDAVKVRKPQKWSGLEYSTGCSWIEMKNTVHTIGTGERSMTNSKRIYSQLARIAEEIKI 722
+ P+ + G SWIE N VHT G++S +++S L R+A +K
Sbjct: 745 FE-------PEGEKAVNKPIGQSWIERNNVVHTFVVGDQSNPYLDKLHSWLKRVAVNVK- 796
Query: 723 VLPYPHDTQLCIEDEEREEKCGFHSEKLALSFALI 827
+ D +L IE+EE+E HSEKLA +FALI
Sbjct: 797 --THVSDNELYIEEEEKENTSSVHSEKLAFAFALI 829
Score = 60.1 bits (144), Expect = 6e-07
Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 4/225 (1%)
Frame = +3
Query: 3 NTLIDAYAKSGNILYARVVFEHLPSRDVISWNTLMAGYVLHGCPNEALNIFEQMRLLGPK 182
N+LID Y K G++ A+ +F+ + RDV SWN+++ GY G +A +F +M+
Sbjct: 393 NSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSP 452
Query: 183 PNRGTFVSIILAYSLAGMVEQGNSTLSSMTNDYQISPGSEHYSAMLDLLGRSHRLGEAVN 362
PN T+ +I Y +G +Q S+ D + + +++++ +S + +A+
Sbjct: 453 PNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQ 512
Query: 363 FVEEMGIEQDYAIWDALLTASRVHGNIALAVRAAE----CLFEMGPKSVNIYRLLVQLYG 530
M +L+ V N+ + + E + + +++ LL+ Y
Sbjct: 513 IFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYA 572
Query: 531 LSGRSDDAVKVRKPQKWSGLEYSTGCSWIEMKNTVHTIGTGERSM 665
SG + + ++ L + SW M ++ G E ++
Sbjct: 573 KSGNLMYSKNI-----FNELSWKDAVSWNSMLSSYVLHGCSESAL 612