BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031545
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39303.3| unnamed protein product [Vitis vinifera]              104   9e-21
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...   104   9e-21
ref|XP_003559172.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-19
ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    99   4e-19
ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containi...    99   4e-19

>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  104 bits (259), Expect = 9e-21
 Identities = 54/97 (55%), Positives = 66/97 (68%)
 Frame = +2

Query: 5   LVNSLIDMYSKCGKVDNARLVFEXXXXXXXXXXXXLIAAYVRSGFSERTLGVLVKMHKSG 184
           L NSLIDMY KCG++D ARLVFE            LIA YVR G ++  L +LVKM + G
Sbjct: 78  LTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHG 137

Query: 185 LKLNCFALGSVLKACSACFNGSGEFGRVVHGCAVKLG 295
           L LN +ALGS LKAC + F+ S E G+++HGCAVKLG
Sbjct: 138 LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 174


>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  104 bits (259), Expect = 9e-21
 Identities = 54/97 (55%), Positives = 66/97 (68%)
 Frame = +2

Query: 5   LVNSLIDMYSKCGKVDNARLVFEXXXXXXXXXXXXLIAAYVRSGFSERTLGVLVKMHKSG 184
           L NSLIDMY KCG++D ARLVFE            LIA YVR G ++  L +LVKM + G
Sbjct: 157 LTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHG 216

Query: 185 LKLNCFALGSVLKACSACFNGSGEFGRVVHGCAVKLG 295
           L LN +ALGS LKAC + F+ S E G+++HGCAVKLG
Sbjct: 217 LNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253


>ref|XP_003559172.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 846

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 50/98 (51%), Positives = 66/98 (67%)
 Frame = +2

Query: 2   FLVNSLIDMYSKCGKVDNARLVFEXXXXXXXXXXXXLIAAYVRSGFSERTLGVLVKMHKS 181
           FL NS+IDMY+KCG +D  RLVF+            L++AYVR G+ E  + VLV MH+S
Sbjct: 199 FLTNSVIDMYAKCGMIDEVRLVFDRAEERDEASWNLLLSAYVRMGWPEVAVHVLVWMHRS 258

Query: 182 GLKLNCFALGSVLKACSACFNGSGEFGRVVHGCAVKLG 295
           G+KL+ FALG +LKACS    GS +  R++HGC VK+G
Sbjct: 259 GVKLDSFALGGILKACSE-LEGSEDVRRMLHGCVVKVG 295


>ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/97 (51%), Positives = 64/97 (65%)
 Frame = +2

Query: 5   LVNSLIDMYSKCGKVDNARLVFEXXXXXXXXXXXXLIAAYVRSGFSERTLGVLVKMHKSG 184
           L NSLIDMYSKCG+VD AR++F+            LIA YV++G  E  L +L KMH++G
Sbjct: 197 LTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNG 256

Query: 185 LKLNCFALGSVLKACSACFNGSGEFGRVVHGCAVKLG 295
           L  N + LGS LKACS+ FNG   FG ++H  A+KLG
Sbjct: 257 LAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLG 293


>ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/97 (51%), Positives = 64/97 (65%)
 Frame = +2

Query: 5   LVNSLIDMYSKCGKVDNARLVFEXXXXXXXXXXXXLIAAYVRSGFSERTLGVLVKMHKSG 184
           L NSLIDMYSKCG+VD AR++F+            LIA YV++G  E  L +L KMH++G
Sbjct: 104 LTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNG 163

Query: 185 LKLNCFALGSVLKACSACFNGSGEFGRVVHGCAVKLG 295
           L  N + LGS LKACS+ FNG   FG ++H  A+KLG
Sbjct: 164 LAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLG 200