BLASTX nr result
ID: Coptis24_contig00031510
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00031510 (343 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi... 135 5e-30 ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi... 123 1e-26 ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ... 107 8e-22 ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21 emb|CBI29194.3| unnamed protein product [Vitis vinifera] 103 2e-20 >ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial [Vitis vinifera] Length = 828 Score = 135 bits (339), Expect = 5e-30 Identities = 66/114 (57%), Positives = 84/114 (73%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 AE +F +PERDL+SWN MI+GYS N S EAQ LF++L +S C+ +LLA+L SCDS Sbjct: 332 AEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDS 391 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2 E L+FGES+HC LKLGF+NN L N LM MYINCGD++A +LL+ +S AD Sbjct: 392 SEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAAD 445 Score = 56.2 bits (134), Expect = 3e-06 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 +E +F + RD+ISWN+M+ G ++N ++ F+++ S + +SL +S+ Sbjct: 127 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 186 Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17 EL FG+ +H +KLG+ N+F N L+ +Y C D+ A+ L + + Sbjct: 187 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 237 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/99 (32%), Positives = 48/99 (48%) Frame = -1 Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155 +F + RD+I WN MI N C A LF EL G + +LL V+S+ Sbjct: 29 LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 88 Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38 L G +H + K G ++ + N L+ MY CG++ +S Sbjct: 89 LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 127 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Frame = -1 Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161 L+ T+ D++ WNT++AG + N EA F + + C++ ++L V+S+C + Sbjct: 436 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 495 Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47 E L G S+H L LK ++ V N L+ MY CG++ Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 533 >ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial-like [Glycine max] Length = 944 Score = 123 bits (309), Expect = 1e-26 Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 AEL+F E+D +SWN MI+GYSHN S EAQ LF E+ R GP+C+ ++ A+LSSC+S Sbjct: 450 AELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNS 509 Query: 163 --FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2 + FG+SVHC LK GF N+ L+ N LM MYINCGD+ AS ++L S +AD Sbjct: 510 LNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALAD 565 Score = 68.6 bits (166), Expect = 5e-10 Identities = 35/110 (31%), Positives = 63/110 (57%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 +E ++ + +D +SWN+++ G +N +A F+ + S + + +SL +S+ S Sbjct: 246 SECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSS 305 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNIS 14 EL FG+SVH L +KLG+ ++ V N L+ +Y C D+ A+ L R I+ Sbjct: 306 LGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIA 355 Score = 60.1 bits (144), Expect = 2e-07 Identities = 35/114 (30%), Positives = 59/114 (51%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 A+++F +L SWN MI+ SHN S EA LF L NE++++ VLS+C Sbjct: 656 AKVVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEP---NEITIIGVLSACTQ 712 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2 L G+ VH + +N ++ L+ +Y NCG + +L + R+ + ++ Sbjct: 713 IGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSE 766 Score = 58.9 bits (141), Expect = 4e-07 Identities = 29/106 (27%), Positives = 54/106 (50%) Frame = -1 Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155 +F + RD I+WN ++A N C A F ++ ++ + +LL ++S+ + Sbjct: 148 LFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFDKMIKAQTGFDSTTLLLIVSASLHMKN 207 Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNI 17 + G ++HC+ +K G + + N L+ MY CGD+ +S L I Sbjct: 208 FDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSECLYEEI 253 >ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513824|gb|AES95447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 955 Score = 107 bits (268), Expect = 8e-22 Identities = 54/114 (47%), Positives = 75/114 (65%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 AEL+F + DL+SWN MI+GYS N +AQ LF+EL G +C+ ++ A+LSSC+S Sbjct: 460 AELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNS 519 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2 L FG+SVH LK GF N+ L+ N LM MYIN GD+ + ++L+ S +AD Sbjct: 520 ANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIAD 573 Score = 60.5 bits (145), Expect = 1e-07 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 +E +F + +D++SWN+++ G +N ++ F+ ++ S + +SL +S+C S Sbjct: 254 SECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSS 313 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVT--NDLMFMYINCGDVIASLALLRNIS 14 EL FGE +H +KLG+ +N V+ N L+ +Y C V + + R ++ Sbjct: 314 LGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMA 365 Score = 58.9 bits (141), Expect = 4e-07 Identities = 30/102 (29%), Positives = 53/102 (51%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 + ++F + RD+I+WN +I+ N C A FQ++ + + +LL V+S+ Sbjct: 151 SRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSH 210 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38 + G +HC+ +K G + + N L+ MY CGDV +S Sbjct: 211 LKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSS 252 Score = 56.2 bits (134), Expect = 3e-06 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%) Frame = -1 Query: 331 FTILPER----DLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCN--ELSLLAVLSSC 170 F+IL E D+ SWNT+I G EA F L R GPS N ++L+ VLS+ Sbjct: 562 FSILQENSSIADIASWNTIIVGCVRGDQFQEALETFM-LMRQGPSFNYDSITLVNVLSAV 620 Query: 169 DSFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47 + E L G+S+H L LK F ++ V N L+ MY C D+ Sbjct: 621 ANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDI 661 >ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial-like [Brachypodium distachyon] Length = 924 Score = 105 bits (261), Expect = 5e-21 Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHN-VCSVEAQGLFQELHRSGPSCNELSLLAVLSSCD 167 A L+F +P RDLISWNTM++GYS + EAQ +F+EL G SC ++LAV+ SC Sbjct: 429 ANLLFRTMPIRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCS 488 Query: 166 SFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2 E+L FG++VH LK GF++ V N LM MYI CGD + + LL +I V+D Sbjct: 489 CPEDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSD 543 Score = 62.0 bits (149), Expect = 5e-08 Identities = 30/97 (30%), Positives = 55/97 (56%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 AEL+F L +R+L SWN M++G++ N A +Q++ + P NE+ ++++ +C Sbjct: 634 AELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFYQKMEKFVP--NEMCTVSIICACTQ 691 Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCG 53 ++ G+S+H +K NN ++ L+ MY CG Sbjct: 692 LRDVRHGKSIHGHVVKSDLQNNVFLSASLVDMYSKCG 728 Score = 59.7 bits (143), Expect = 2e-07 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = -1 Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGP-SCNELSLLAVLSSCDSF 161 L+ +I+P D+ISWNT + G N A FQ +H S P + + ++L++VLS+C + Sbjct: 534 LLGSIMPVSDIISWNTAVVGCVQNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSACGTL 593 Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISD 11 + G+S+H + LK N V N L+ MY D ++ + ++ D Sbjct: 594 KLQSLGKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESAELIFYSLGD 643 >emb|CBI29194.3| unnamed protein product [Vitis vinifera] Length = 862 Score = 103 bits (256), Expect = 2e-20 Identities = 51/90 (56%), Positives = 65/90 (72%) Frame = -1 Query: 271 HNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEELEFGESVHCLHLKLGFSNNFL 92 HN S EAQ LF++L +S C+ +LLA+L SCDS E L+FGES+HC LKLGF+NN L Sbjct: 375 HNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPL 434 Query: 91 VTNDLMFMYINCGDVIASLALLRNISDVAD 2 N LM MYINCGD++A +LL+ +S AD Sbjct: 435 AVNSLMLMYINCGDLVACFSLLQTVSAAAD 464 Score = 56.2 bits (134), Expect = 3e-06 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Frame = -1 Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164 +E +F + RD+ISWN+M+ G ++N ++ F+++ S + +SL +S+ Sbjct: 168 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 227 Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17 EL FG+ +H +KLG+ N+F N L+ +Y C D+ A+ L + + Sbjct: 228 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 278 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/99 (32%), Positives = 48/99 (48%) Frame = -1 Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155 +F + RD+I WN MI N C A LF EL G + +LL V+S+ Sbjct: 70 LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 129 Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38 L G +H + K G ++ + N L+ MY CG++ +S Sbjct: 130 LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 168 Score = 55.5 bits (132), Expect = 5e-06 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Frame = -1 Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161 L+ T+ D++ WNT++AG + N EA F + + C++ ++L V+S+C + Sbjct: 455 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 514 Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47 E L G S+H L LK ++ V N L+ MY CG++ Sbjct: 515 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 552