BLASTX nr result
ID: Coptis24_contig00031510
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00031510
(343 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi... 135 5e-30
ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi... 123 1e-26
ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ... 107 8e-22
ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containi... 105 5e-21
emb|CBI29194.3| unnamed protein product [Vitis vinifera] 103 2e-20
>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial [Vitis vinifera]
Length = 828
Score = 135 bits (339), Expect = 5e-30
Identities = 66/114 (57%), Positives = 84/114 (73%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
AE +F +PERDL+SWN MI+GYS N S EAQ LF++L +S C+ +LLA+L SCDS
Sbjct: 332 AEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDS 391
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
E L+FGES+HC LKLGF+NN L N LM MYINCGD++A +LL+ +S AD
Sbjct: 392 SEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAAD 445
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
+E +F + RD+ISWN+M+ G ++N ++ F+++ S + +SL +S+
Sbjct: 127 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 186
Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17
EL FG+ +H +KLG+ N+F N L+ +Y C D+ A+ L + +
Sbjct: 187 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 237
Score = 55.5 bits (132), Expect = 5e-06
Identities = 32/99 (32%), Positives = 48/99 (48%)
Frame = -1
Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
+F + RD+I WN MI N C A LF EL G + +LL V+S+
Sbjct: 29 LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 88
Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
L G +H + K G ++ + N L+ MY CG++ +S
Sbjct: 89 LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 127
Score = 55.5 bits (132), Expect = 5e-06
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = -1
Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161
L+ T+ D++ WNT++AG + N EA F + + C++ ++L V+S+C +
Sbjct: 436 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 495
Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
E L G S+H L LK ++ V N L+ MY CG++
Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 533
>ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Glycine max]
Length = 944
Score = 123 bits (309), Expect = 1e-26
Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
AEL+F E+D +SWN MI+GYSHN S EAQ LF E+ R GP+C+ ++ A+LSSC+S
Sbjct: 450 AELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNS 509
Query: 163 --FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
+ FG+SVHC LK GF N+ L+ N LM MYINCGD+ AS ++L S +AD
Sbjct: 510 LNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALAD 565
Score = 68.6 bits (166), Expect = 5e-10
Identities = 35/110 (31%), Positives = 63/110 (57%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
+E ++ + +D +SWN+++ G +N +A F+ + S + + +SL +S+ S
Sbjct: 246 SECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSS 305
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNIS 14
EL FG+SVH L +KLG+ ++ V N L+ +Y C D+ A+ L R I+
Sbjct: 306 LGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIA 355
Score = 60.1 bits (144), Expect = 2e-07
Identities = 35/114 (30%), Positives = 59/114 (51%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
A+++F +L SWN MI+ SHN S EA LF L NE++++ VLS+C
Sbjct: 656 AKVVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEP---NEITIIGVLSACTQ 712
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
L G+ VH + +N ++ L+ +Y NCG + +L + R+ + ++
Sbjct: 713 IGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSE 766
Score = 58.9 bits (141), Expect = 4e-07
Identities = 29/106 (27%), Positives = 54/106 (50%)
Frame = -1
Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
+F + RD I+WN ++A N C A F ++ ++ + +LL ++S+ +
Sbjct: 148 LFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFDKMIKAQTGFDSTTLLLIVSASLHMKN 207
Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNI 17
+ G ++HC+ +K G + + N L+ MY CGD+ +S L I
Sbjct: 208 FDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSECLYEEI 253
>ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513824|gb|AES95447.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 955
Score = 107 bits (268), Expect = 8e-22
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
AEL+F + DL+SWN MI+GYS N +AQ LF+EL G +C+ ++ A+LSSC+S
Sbjct: 460 AELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNS 519
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
L FG+SVH LK GF N+ L+ N LM MYIN GD+ + ++L+ S +AD
Sbjct: 520 ANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIAD 573
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
+E +F + +D++SWN+++ G +N ++ F+ ++ S + +SL +S+C S
Sbjct: 254 SECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSS 313
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVT--NDLMFMYINCGDVIASLALLRNIS 14
EL FGE +H +KLG+ +N V+ N L+ +Y C V + + R ++
Sbjct: 314 LGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMA 365
Score = 58.9 bits (141), Expect = 4e-07
Identities = 30/102 (29%), Positives = 53/102 (51%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
+ ++F + RD+I+WN +I+ N C A FQ++ + + +LL V+S+
Sbjct: 151 SRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSH 210
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
+ G +HC+ +K G + + N L+ MY CGDV +S
Sbjct: 211 LKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSS 252
Score = 56.2 bits (134), Expect = 3e-06
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = -1
Query: 331 FTILPER----DLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCN--ELSLLAVLSSC 170
F+IL E D+ SWNT+I G EA F L R GPS N ++L+ VLS+
Sbjct: 562 FSILQENSSIADIASWNTIIVGCVRGDQFQEALETFM-LMRQGPSFNYDSITLVNVLSAV 620
Query: 169 DSFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
+ E L G+S+H L LK F ++ V N L+ MY C D+
Sbjct: 621 ANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDI 661
>ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial-like [Brachypodium distachyon]
Length = 924
Score = 105 bits (261), Expect = 5e-21
Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHN-VCSVEAQGLFQELHRSGPSCNELSLLAVLSSCD 167
A L+F +P RDLISWNTM++GYS + EAQ +F+EL G SC ++LAV+ SC
Sbjct: 429 ANLLFRTMPIRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCS 488
Query: 166 SFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
E+L FG++VH LK GF++ V N LM MYI CGD + + LL +I V+D
Sbjct: 489 CPEDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSD 543
Score = 62.0 bits (149), Expect = 5e-08
Identities = 30/97 (30%), Positives = 55/97 (56%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
AEL+F L +R+L SWN M++G++ N A +Q++ + P NE+ ++++ +C
Sbjct: 634 AELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFYQKMEKFVP--NEMCTVSIICACTQ 691
Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCG 53
++ G+S+H +K NN ++ L+ MY CG
Sbjct: 692 LRDVRHGKSIHGHVVKSDLQNNVFLSASLVDMYSKCG 728
Score = 59.7 bits (143), Expect = 2e-07
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = -1
Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGP-SCNELSLLAVLSSCDSF 161
L+ +I+P D+ISWNT + G N A FQ +H S P + + ++L++VLS+C +
Sbjct: 534 LLGSIMPVSDIISWNTAVVGCVQNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSACGTL 593
Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISD 11
+ G+S+H + LK N V N L+ MY D ++ + ++ D
Sbjct: 594 KLQSLGKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESAELIFYSLGD 643
>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
Length = 862
Score = 103 bits (256), Expect = 2e-20
Identities = 51/90 (56%), Positives = 65/90 (72%)
Frame = -1
Query: 271 HNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEELEFGESVHCLHLKLGFSNNFL 92
HN S EAQ LF++L +S C+ +LLA+L SCDS E L+FGES+HC LKLGF+NN L
Sbjct: 375 HNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPL 434
Query: 91 VTNDLMFMYINCGDVIASLALLRNISDVAD 2
N LM MYINCGD++A +LL+ +S AD
Sbjct: 435 AVNSLMLMYINCGDLVACFSLLQTVSAAAD 464
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Frame = -1
Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
+E +F + RD+ISWN+M+ G ++N ++ F+++ S + +SL +S+
Sbjct: 168 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 227
Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17
EL FG+ +H +KLG+ N+F N L+ +Y C D+ A+ L + +
Sbjct: 228 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 278
Score = 55.5 bits (132), Expect = 5e-06
Identities = 32/99 (32%), Positives = 48/99 (48%)
Frame = -1
Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
+F + RD+I WN MI N C A LF EL G + +LL V+S+
Sbjct: 70 LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 129
Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
L G +H + K G ++ + N L+ MY CG++ +S
Sbjct: 130 LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 168
Score = 55.5 bits (132), Expect = 5e-06
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = -1
Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161
L+ T+ D++ WNT++AG + N EA F + + C++ ++L V+S+C +
Sbjct: 455 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 514
Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
E L G S+H L LK ++ V N L+ MY CG++
Sbjct: 515 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 552