BLASTX nr result

ID: Coptis24_contig00031510 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031510
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi...   135   5e-30
ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26
ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ...   107   8e-22
ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
emb|CBI29194.3| unnamed protein product [Vitis vinifera]              103   2e-20

>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  135 bits (339), Expect = 5e-30
 Identities = 66/114 (57%), Positives = 84/114 (73%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           AE +F  +PERDL+SWN MI+GYS N  S EAQ LF++L +S   C+  +LLA+L SCDS
Sbjct: 332 AEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDS 391

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
            E L+FGES+HC  LKLGF+NN L  N LM MYINCGD++A  +LL+ +S  AD
Sbjct: 392 SEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAAD 445



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           +E +F  +  RD+ISWN+M+ G ++N    ++   F+++  S    + +SL   +S+   
Sbjct: 127 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 186

Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17
             EL FG+ +H   +KLG+     N+F   N L+ +Y  C D+ A+  L + +
Sbjct: 187 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 237



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/99 (32%), Positives = 48/99 (48%)
 Frame = -1

Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
           +F  +  RD+I WN MI     N C   A  LF EL   G   +  +LL V+S+      
Sbjct: 29  LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 88

Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
           L  G  +H +  K G  ++  + N L+ MY  CG++ +S
Sbjct: 89  LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 127



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = -1

Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161
           L+ T+    D++ WNT++AG + N    EA   F  + +    C++ ++L  V+S+C + 
Sbjct: 436 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 495

Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
           E L  G S+H L LK    ++  V N L+ MY  CG++
Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 533


>ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Glycine max]
          Length = 944

 Score =  123 bits (309), Expect = 1e-26
 Identities = 61/116 (52%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           AEL+F    E+D +SWN MI+GYSHN  S EAQ LF E+ R GP+C+  ++ A+LSSC+S
Sbjct: 450 AELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNS 509

Query: 163 --FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
                + FG+SVHC  LK GF N+ L+ N LM MYINCGD+ AS ++L   S +AD
Sbjct: 510 LNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALAD 565



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/110 (31%), Positives = 63/110 (57%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           +E ++  +  +D +SWN+++ G  +N    +A   F+ +  S  + + +SL   +S+  S
Sbjct: 246 SECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSS 305

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNIS 14
             EL FG+SVH L +KLG+ ++  V N L+ +Y  C D+ A+  L R I+
Sbjct: 306 LGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIA 355



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/114 (30%), Positives = 59/114 (51%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           A+++F      +L SWN MI+  SHN  S EA  LF  L       NE++++ VLS+C  
Sbjct: 656 AKVVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEP---NEITIIGVLSACTQ 712

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
              L  G+ VH    +    +N  ++  L+ +Y NCG +  +L + R+  + ++
Sbjct: 713 IGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSE 766



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/106 (27%), Positives = 54/106 (50%)
 Frame = -1

Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
           +F  +  RD I+WN ++A    N C   A   F ++ ++    +  +LL ++S+    + 
Sbjct: 148 LFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFDKMIKAQTGFDSTTLLLIVSASLHMKN 207

Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNI 17
            + G ++HC+ +K G   +  + N L+ MY  CGD+ +S  L   I
Sbjct: 208 FDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSECLYEEI 253


>ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513824|gb|AES95447.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 955

 Score =  107 bits (268), Expect = 8e-22
 Identities = 54/114 (47%), Positives = 75/114 (65%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           AEL+F    + DL+SWN MI+GYS N    +AQ LF+EL   G +C+  ++ A+LSSC+S
Sbjct: 460 AELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNS 519

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
              L FG+SVH   LK GF N+ L+ N LM MYIN GD+ +  ++L+  S +AD
Sbjct: 520 ANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIAD 573



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           +E +F  +  +D++SWN+++ G  +N    ++   F+ ++ S    + +SL   +S+C S
Sbjct: 254 SECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSS 313

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVT--NDLMFMYINCGDVIASLALLRNIS 14
             EL FGE +H   +KLG+ +N  V+  N L+ +Y  C  V  +  + R ++
Sbjct: 314 LGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMA 365



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/102 (29%), Positives = 53/102 (51%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           + ++F  +  RD+I+WN +I+    N C   A   FQ++ +     +  +LL V+S+   
Sbjct: 151 SRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSH 210

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
            +    G  +HC+ +K G   +  + N L+ MY  CGDV +S
Sbjct: 211 LKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSS 252



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
 Frame = -1

Query: 331 FTILPER----DLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCN--ELSLLAVLSSC 170
           F+IL E     D+ SWNT+I G        EA   F  L R GPS N   ++L+ VLS+ 
Sbjct: 562 FSILQENSSIADIASWNTIIVGCVRGDQFQEALETFM-LMRQGPSFNYDSITLVNVLSAV 620

Query: 169 DSFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
            + E L  G+S+H L LK  F ++  V N L+ MY  C D+
Sbjct: 621 ANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDI 661


>ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Brachypodium distachyon]
          Length = 924

 Score =  105 bits (261), Expect = 5e-21
 Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHN-VCSVEAQGLFQELHRSGPSCNELSLLAVLSSCD 167
           A L+F  +P RDLISWNTM++GYS +     EAQ +F+EL   G SC   ++LAV+ SC 
Sbjct: 429 ANLLFRTMPIRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCS 488

Query: 166 SFEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISDVAD 2
             E+L FG++VH   LK GF++   V N LM MYI CGD + +  LL +I  V+D
Sbjct: 489 CPEDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSD 543



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/97 (30%), Positives = 55/97 (56%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           AEL+F  L +R+L SWN M++G++ N     A   +Q++ +  P  NE+  ++++ +C  
Sbjct: 634 AELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFYQKMEKFVP--NEMCTVSIICACTQ 691

Query: 163 FEELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCG 53
             ++  G+S+H   +K    NN  ++  L+ MY  CG
Sbjct: 692 LRDVRHGKSIHGHVVKSDLQNNVFLSASLVDMYSKCG 728



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
 Frame = -1

Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGP-SCNELSLLAVLSSCDSF 161
           L+ +I+P  D+ISWNT + G   N     A   FQ +H S P + + ++L++VLS+C + 
Sbjct: 534 LLGSIMPVSDIISWNTAVVGCVQNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSACGTL 593

Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIASLALLRNISD 11
           +    G+S+H + LK     N  V N L+ MY    D  ++  +  ++ D
Sbjct: 594 KLQSLGKSIHSMALKRLLVFNLRVKNALLTMYFRFADTESAELIFYSLGD 643


>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  103 bits (256), Expect = 2e-20
 Identities = 51/90 (56%), Positives = 65/90 (72%)
 Frame = -1

Query: 271 HNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEELEFGESVHCLHLKLGFSNNFL 92
           HN  S EAQ LF++L +S   C+  +LLA+L SCDS E L+FGES+HC  LKLGF+NN L
Sbjct: 375 HNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPL 434

Query: 91  VTNDLMFMYINCGDVIASLALLRNISDVAD 2
             N LM MYINCGD++A  +LL+ +S  AD
Sbjct: 435 AVNSLMLMYINCGDLVACFSLLQTVSAAAD 464



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
 Frame = -1

Query: 343 AELMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDS 164
           +E +F  +  RD+ISWN+M+ G ++N    ++   F+++  S    + +SL   +S+   
Sbjct: 168 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 227

Query: 163 FEELEFGESVHCLHLKLGFS----NNFLVTNDLMFMYINCGDVIASLALLRNI 17
             EL FG+ +H   +KLG+     N+F   N L+ +Y  C D+ A+  L + +
Sbjct: 228 LGELSFGQVIHGWGIKLGYKDISHNSF--ENSLISLYSQCRDIQAAEILFKEM 278



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/99 (32%), Positives = 48/99 (48%)
 Frame = -1

Query: 334 MFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNELSLLAVLSSCDSFEE 155
           +F  +  RD+I WN MI     N C   A  LF EL   G   +  +LL V+S+      
Sbjct: 70  LFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGN 129

Query: 154 LEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDVIAS 38
           L  G  +H +  K G  ++  + N L+ MY  CG++ +S
Sbjct: 130 LTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSS 168



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = -1

Query: 337 LMFTILPERDLISWNTMIAGYSHNVCSVEAQGLFQELHRSGPSCNE-LSLLAVLSSCDSF 161
           L+ T+    D++ WNT++AG + N    EA   F  + +    C++ ++L  V+S+C + 
Sbjct: 455 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 514

Query: 160 EELEFGESVHCLHLKLGFSNNFLVTNDLMFMYINCGDV 47
           E L  G S+H L LK    ++  V N L+ MY  CG++
Sbjct: 515 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEI 552


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