BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031450
         (695 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   125   8e-27
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   124   2e-26
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   120   3e-25
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   117   2e-24
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   116   5e-24

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  125 bits (314), Expect = 8e-27
 Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 1/230 (0%)
 Frame = +2

Query: 8   VKKAQEELMEAQRVSDQDPTNDDLVNNVIEKELLLDQALTDKCVMLKQKSTERWIDGGER 187
           V+ A EE+   Q++ D    +D L    +E  L+L +AL  +  + ++K  ++    G+R
Sbjct: 305 VRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWREKLRDQRFIHGDR 364

Query: 188 STSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFKF-HPVQYDEQLF 364
           +T+YFH + +V+   + ++ +  +   ++ D   I+ HV+ +++  F   +    ++ + 
Sbjct: 365 NTAYFHRISKVRATKNTISFLQ-DGDAVITDPARIEVHVLNYFQAIFSVDNSCIQNDLVV 423

Query: 365 NAVPLLVSEQDNALLSCTPTYA*IQQAVFDMDPASSPGPDGFNGAFFHHCWPIVSVDVCF 544
           + +P LVS  DN  L   P +  ++ AVF ++   +PGP+GF G F+   W IV  DV  
Sbjct: 424 DTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADVIQ 483

Query: 545 AIQSFFINLNVPTSFNSNFVTLIPKEKRAVKIKQFRPICMGNFSMKIVSK 694
           ++Q FFI+  +  + NSN + LIPK   A  +  +RPI + NF  KI+SK
Sbjct: 484 SVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISK 533


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  124 bits (310), Expect = 2e-26
 Identities = 76/229 (33%), Positives = 117/229 (51%)
 Frame = +2

Query: 8   VKKAQEELMEAQRVSDQDPTNDDLVNNVIEKELLLDQALTDKCVMLKQKSTERWIDGGER 187
           V +A+++L + Q   +    ND+L+N     +  LD AL  +     +K+  +W  GG+R
Sbjct: 56  VTQAEKKLSDIQNHINTSGHNDNLMNAEKIAQTNLDLALQKQETFWVEKAKLKWHVGGDR 115

Query: 188 STSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFKFHPVQYDEQLFN 367
           +T YFH + ++K    +++ +  +   IL DQ  I +H     EE               
Sbjct: 116 NTKYFHRLTKIKNKTKIISSLR-KGEEILTDQTRISEHDHLLVEE--------------- 159

Query: 368 AVPLLVSEQDNALLSCTPTYA*IQQAVFDMDPASSPGPDGFNGAFFHHCWPIVSVDVCFA 547
           A+P LV    N LL+  PT   ++ AVFD++   +PGPD F   FF   W IV  DV  A
Sbjct: 160 AIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEA 219

Query: 548 IQSFFINLNVPTSFNSNFVTLIPKEKRAVKIKQFRPICMGNFSMKIVSK 694
           +  FF N  +P +FN+N + LIPK   A  + Q+R I + NF  KI++K
Sbjct: 220 VLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINK 268


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  120 bits (301), Expect = 3e-25
 Identities = 68/229 (29%), Positives = 114/229 (49%)
 Frame = +2

Query: 8   VKKAQEELMEAQRVSDQDPTNDDLVNNVIEKELLLDQALTDKCVMLKQKSTERWIDGGER 187
           ++K Q+ L EA      +PT    +   +E    L++         KQ+S   W+  G+R
Sbjct: 192 IEKTQKALEEALTADPPNPTTIGALTATLEHAYKLEEQFW------KQRSRVLWLHSGDR 245

Query: 188 STSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFKFHPVQYDEQLFN 367
           +T YFH + R ++  + LT +    G   +++  I Q +  ++++ F          +  
Sbjct: 246 NTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDE 305

Query: 368 AVPLLVSEQDNALLSCTPTYA*IQQAVFDMDPASSPGPDGFNGAFFHHCWPIVSVDVCFA 547
           A+  +VS+ DN  L+  P    ++ AVF ++ + +PGPDGF   F+H  W I+S DV   
Sbjct: 306 AIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGRE 365

Query: 548 IQSFFINLNVPTSFNSNFVTLIPKEKRAVKIKQFRPICMGNFSMKIVSK 694
           I+ FF + N P   N   + LIPK+    K+  +RPI + N   KIV+K
Sbjct: 366 IRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAK 414


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  117 bits (293), Expect = 2e-24
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 4/188 (2%)
 Frame = +2

Query: 143  LKQKSTERWIDGGERSTSYFHIMHRVKQAHSVLTEIHTETGTILNDQETIKQHVVQFYEE 322
            LK+KS   W+DGG+++   FH     ++A + ++EI  + G++    + IK +  +F+ E
Sbjct: 765  LKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGDEIKAYAERFFRE 824

Query: 323  KFKFHPVQYD----EQLFNAVPLLVSEQDNALLSCTPTYA*IQQAVFDMDPASSPGPDGF 490
              +  P +Y+      L + +P   SE ++ LL+   T   I++ +F M    SPGPDGF
Sbjct: 825  FLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGF 884

Query: 491  NGAFFHHCWPIVSVDVCFAIQSFFINLNVPTSFNSNFVTLIPKEKRAVKIKQFRPICMGN 670
               FF   W I+  +   AIQSFF    +P   N+  + LIPK+K A ++K +RPI   N
Sbjct: 885  TSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCN 944

Query: 671  FSMKIVSK 694
               K++SK
Sbjct: 945  VIYKVISK 952


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  116 bits (290), Expect = 5e-24
 Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
 Frame = +2

Query: 56  QDPTNDDLVNNVIEKELLLDQALTD----KCVMLKQKSTERWIDGGERSTSYFHIMHRVK 223
           Q P ND     VI++E L++Q L +    + +M +Q+S   W+  G+R+T++FH     +
Sbjct: 323 QSPVNDV----VIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASAR 378

Query: 224 QAHSVLTEIHTETGTILNDQETIKQHVVQFYEEKFKFHPVQYDEQLFNAVPLLVSEQDNA 403
           +  + + E+  + G+    QE IK+    FYE  F   P    E++ +A+P  V +  N 
Sbjct: 379 RRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFING 438

Query: 404 LLSCTPTYA*IQQAVFDMDPASSPGPDGFNGAFFHHCWPIVSVDVCFAIQSFFINLNVPT 583
            L    T   I+ A+F M    +PGPDGF   F+   W I+   +C A++ F +   +P 
Sbjct: 439 ELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPE 498

Query: 584 SFNSNFVTLIPKEKRAVKIKQFRPICMGNFSMKIVSK 694
               + V LIPK   A  + +FRPI + N   KI SK
Sbjct: 499 GLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASK 535