BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031377
         (1041 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloropla...   308   1e-81
ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide defo...   308   1e-81
ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus c...   303   5e-80
ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solan...   298   2e-78
ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi...   298   2e-78

>ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 1
            [Cucumis sativus]
          Length = 267

 Score =  308 bits (789), Expect = 1e-81
 Identities = 168/276 (60%), Positives = 193/276 (69%), Gaps = 1/276 (0%)
 Frame = -1

Query: 1041 HRFSQRLFPISSLPDKCFKTCKSSTILKYPIFFLGSHSCKVLQQPTGPLSS-GRFIXXXX 865
            HRFS RLFPIS L ++C K              L  +  K++ +P     +  +FI    
Sbjct: 5    HRFSFRLFPIS-LAERCRKPS-----------LLPPNFRKLIHRPISSSPNIPKFIPVPK 52

Query: 864  XXXXXXXXXRAGGWFXXXXXXXKEVMLPDIVKAGDPVLHEAAQEVPVDEIGSXXXXXXXX 685
                        GWF        ++ LP IVKAGDPVLHE A+EV   EIGS        
Sbjct: 53   TYSSSSTSIAKAGWFLGLGEQK-KMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIID 111

Query: 684  XXXMVLRKAPGVGLAAPQIGIPLKIIVLEDTKEYISYAPKEENEARDRRPFELLVILNPK 505
               + +RKAPGVGLAAPQIGIPL+IIVLEDTKEYISYAPKEE +A+DRR F+LLVI+NPK
Sbjct: 112  DMILTMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPK 171

Query: 504  LKKKNDKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRDGSPIRVDASGWQARILQHECD 325
            LK K++KTALFFEGCLSVDGFRAVVER+LDVEV GF RDG+PI+VDASGWQARILQHECD
Sbjct: 172  LKSKSNKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECD 231

Query: 324  HLDGTIYVDKLVPRTFRTVENLNLPLPNGCHKLGVR 217
            HLDGT+YVDK+VPRTFRT ENL LPL  GC KLG R
Sbjct: 232  HLDGTLYVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267


>ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A,
            chloroplastic-like [Cucumis sativus]
          Length = 267

 Score =  308 bits (789), Expect = 1e-81
 Identities = 169/276 (61%), Positives = 194/276 (70%), Gaps = 1/276 (0%)
 Frame = -1

Query: 1041 HRFSQRLFPISSLPDKCFKTCKSSTILKYPIFFLGSHSCKVLQQPTGPLSS-GRFIXXXX 865
            HRFS RLFPIS L ++C K              L  +  K++ +P     +  +FI    
Sbjct: 5    HRFSFRLFPIS-LAERCRKPS-----------LLPPNFRKLIHRPISSSPNIPKFIPVPK 52

Query: 864  XXXXXXXXXRAGGWFXXXXXXXKEVMLPDIVKAGDPVLHEAAQEVPVDEIGSXXXXXXXX 685
                        GWF        ++ LP IVKAGDPVLHE A+EV   EIGS        
Sbjct: 53   TYSSSSTSIAKAGWFLGLGEQK-KMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVXKIID 111

Query: 684  XXXMVLRKAPGVGLAAPQIGIPLKIIVLEDTKEYISYAPKEENEARDRRPFELLVILNPK 505
               + +RKAPGVGLAAPQIGIPL+IIVLEDTKEYISYAPKEE +A+DRR F+LLVI+NPK
Sbjct: 112  DMILTMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPK 171

Query: 504  LKKKNDKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRDGSPIRVDASGWQARILQHECD 325
            LK K++KTALFFEGCLSVDGFRAVVER+LDVEV GF RDG+PI+VDASGWQARILQHECD
Sbjct: 172  LKSKSNKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECD 231

Query: 324  HLDGTIYVDKLVPRTFRTVENLNLPLPNGCHKLGVR 217
            HLDGT+YVDK+VPRTFRT ENL LPL  GC KLG R
Sbjct: 232  HLDGTLYVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267


>ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
            gi|223543236|gb|EEF44768.1| polypeptide deformylase,
            putative [Ricinus communis]
          Length = 266

 Score =  303 bits (776), Expect = 5e-80
 Identities = 165/275 (60%), Positives = 188/275 (68%)
 Frame = -1

Query: 1041 HRFSQRLFPISSLPDKCFKTCKSSTILKYPIFFLGSHSCKVLQQPTGPLSSGRFIXXXXX 862
            HRFS RL PIS L DKC K  K   I +     +     +     T P S  R       
Sbjct: 5    HRFSLRLLPIS-LADKCLKPTKHHPIYRLTRIPISKPDFRT----TIPYSITR------- 52

Query: 861  XXXXXXXXRAGGWFXXXXXXXKEVMLPDIVKAGDPVLHEAAQEVPVDEIGSXXXXXXXXX 682
                       GW         ++ LPDIVKAGDPVLHE A+EV  DEIGS         
Sbjct: 53   KSLSSSSIAKAGWLLGLGENK-KMSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDD 111

Query: 681  XXMVLRKAPGVGLAAPQIGIPLKIIVLEDTKEYISYAPKEENEARDRRPFELLVILNPKL 502
               V+R+APGVGLAAPQIG+PL+IIVLEDT EYI YAPKEE +A+DRRPF+LLVILNPKL
Sbjct: 112  MVKVMRRAPGVGLAAPQIGVPLRIIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKL 171

Query: 501  KKKNDKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRDGSPIRVDASGWQARILQHECDH 322
            KKK ++TALFFEGCLSVDGFRAVVER L+VEV+G  R G PI+VDASGWQARILQHECDH
Sbjct: 172  KKKGNRTALFFEGCLSVDGFRAVVERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDH 231

Query: 321  LDGTIYVDKLVPRTFRTVENLNLPLPNGCHKLGVR 217
            LDGT+YVDK+VPRTFRTV+NL+LPL  GC  LG +
Sbjct: 232  LDGTLYVDKMVPRTFRTVDNLDLPLAEGCPNLGAQ 266


>ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solanum lycopersicum]
           gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName:
           Full=Peptide deformylase 1A, chloroplastic; Short=PDF
           1A; AltName: Full=Polypeptide deformylase; Flags:
           Precursor gi|11320968|gb|AAG33981.1|AF271258_1 peptide
           deformylase-like protein [Solanum lycopersicum]
          Length = 277

 Score =  298 bits (762), Expect = 2e-78
 Identities = 149/203 (73%), Positives = 167/203 (82%)
 Frame = -1

Query: 828 GWFXXXXXXXKEVMLPDIVKAGDPVLHEAAQEVPVDEIGSXXXXXXXXXXXMVLRKAPGV 649
           GWF       K+ M PDIVKAGDPVLHE +Q++P++EIGS            V+R APGV
Sbjct: 75  GWFLGLGEKKKQAM-PDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGV 133

Query: 648 GLAAPQIGIPLKIIVLEDTKEYISYAPKEENEARDRRPFELLVILNPKLKKKNDKTALFF 469
           GLAAPQIGIPLKIIVLEDT EYISYAPK+E +A+DRRPF LLVI+NPKLKKK +KTALFF
Sbjct: 134 GLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFF 193

Query: 468 EGCLSVDGFRAVVERHLDVEVTGFGRDGSPIRVDASGWQARILQHECDHLDGTIYVDKLV 289
           EGCLSVDGFRAVVERHL+VEVTG  R+G  I+VDASGWQARILQHE DHLDGT+YVDK+ 
Sbjct: 194 EGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMA 253

Query: 288 PRTFRTVENLNLPLPNGCHKLGV 220
           PRTFRTVENL+LPL  GC KLGV
Sbjct: 254 PRTFRTVENLDLPLAAGCPKLGV 276


>ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi|222845365|gb|EEE82912.1|
            peptide deformylase [Populus trichocarpa]
          Length = 299

 Score =  298 bits (762), Expect = 2e-78
 Identities = 160/275 (58%), Positives = 186/275 (67%)
 Frame = -1

Query: 1041 HRFSQRLFPISSLPDKCFKTCKSSTILKYPIFFLGSHSCKVLQQPTGPLSSGRFIXXXXX 862
            HR S RL PIS L +KCFK     TI ++    +          P    ++ + +     
Sbjct: 38   HRCSLRLLPIS-LAEKCFKPTTLPTIFRFTRMLVPKPE---FMNPNPHFTTRKSLSSSHT 93

Query: 861  XXXXXXXXRAGGWFXXXXXXXKEVMLPDIVKAGDPVLHEAAQEVPVDEIGSXXXXXXXXX 682
                       GW         +  LPDIVKAGDPVLHE A+EV   EIGS         
Sbjct: 94   AK--------AGWLLGMGEKK-KTSLPDIVKAGDPVLHEPAREVDPKEIGSERIQKIIDD 144

Query: 681  XXMVLRKAPGVGLAAPQIGIPLKIIVLEDTKEYISYAPKEENEARDRRPFELLVILNPKL 502
               V+R APGVGLAAPQIGIPL+IIVLEDT EYI YAPK E +A+DRRPF+LLVI+NPKL
Sbjct: 145  MVKVMRMAPGVGLAAPQIGIPLRIIVLEDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKL 204

Query: 501  KKKNDKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRDGSPIRVDASGWQARILQHECDH 322
            KKK+++TA FFEGCLSVDGFRA+VERHLDVEV G  RDG PI+VDASGWQARILQHECDH
Sbjct: 205  KKKSNRTAFFFEGCLSVDGFRAIVERHLDVEVIGLSRDGQPIKVDASGWQARILQHECDH 264

Query: 321  LDGTIYVDKLVPRTFRTVENLNLPLPNGCHKLGVR 217
            L+GT+YVDK+VPRTFRTVENL+LPL  GC + G R
Sbjct: 265  LEGTLYVDKMVPRTFRTVENLDLPLAEGCPEPGSR 299