BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00031039
         (557 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      56   3e-06
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...    56   4e-06
emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group]          55   1e-05

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 46/127 (36%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
 Frame = -2

Query: 556 SDVCGHM*M*RY--VSYFLTLIDNCSRYEICYL------TIIKFWVVSNALY*RLR*KNK 401
           +DVCG M         YF+T  D+ SRY   YL      +  KF    N +   L    K
Sbjct: 501 TDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHL---GK 557

Query: 400 RVRILQANQGREHFSNHFKNHVRKRRYTDNAIFHIFGNNNGVAERRNITHLAMVRSMMVQ 221
            ++ L++++G E+ S  F NH++                NGV+ERRN T L MVRSMM Q
Sbjct: 558 TIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQ 617

Query: 220 PILSLSF 200
             L LSF
Sbjct: 618 SDLPLSF 624


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 47/127 (37%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
 Frame = -2

Query: 556  SDVCGHM*M*RYVS--YFLTLIDNCSRYEICYL------TIIKFWVVSNALY*RLR*KNK 401
            +DVCG M         YF+T  D+ SRY   YL      +  KF    N +   LR   K
Sbjct: 977  TDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLR---K 1033

Query: 400  RVRILQANQGREHFSNHFKNHVRKRRYTDNAIFHIFGNNNGVAERRNITHLAMVRSMMVQ 221
             ++ L+++ G E+ S  F NH++                NGV+ERRN T L MVRSMM Q
Sbjct: 1034 TIKYLRSDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQ 1093

Query: 220  PILSLSF 200
              L LSF
Sbjct: 1094 TNLLLSF 1100


>emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group]
          Length = 448

 Score = 54.7 bits (130), Expect = 1e-05
 Identities = 45/127 (35%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
 Frame = -2

Query: 556 SDVCGHM*M*RY--VSYFLTLIDNCSRYEICYLT------IIKFWVVSNALY*RLR*KNK 401
           +DVCG M         YF+T  D+ SRY   YL         KF    N +   L   +K
Sbjct: 80  TDVCGPMSSTARGGFRYFITFTDDFSRYGYVYLMRHKSEYFEKFKEFHNEVQNHL---DK 136

Query: 400 RVRILQANQGREHFSNHFKNHVRKRRYTDNAIFHIFGNNNGVAERRNITHLAMVRSMMVQ 221
            ++ L++++G E+ +  F NH+++               NGV+ERRN T L MVRSMM Q
Sbjct: 137 TIKYLRSDRGGEYLTLEFGNHLKEGGIVPQLTPPGMPQWNGVSERRNRTLLDMVRSMMSQ 196

Query: 220 PILSLSF 200
             L LSF
Sbjct: 197 TDLPLSF 203