BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030992
         (447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN06154.1| gag-pol polyprotein, putative [Medicago truncatula]     95   7e-18
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                       95   7e-18
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                       92   6e-17
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                       92   6e-17
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                       91   1e-16

>gb|ABN06154.1| gag-pol polyprotein, putative [Medicago truncatula]
          Length = 315

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 48/124 (38%), Positives = 67/124 (54%)
 Frame = +1

Query: 1   PNVQYFRIFGSPCYVCRDHENLSKFDTRGDKGILLGYSSNSRAFRVYNERTQTIMESCNV 180
           P V+YF +FGS CY+  D ++  K D + D+GI LGYS+NSRA+RV+N RT+ +MES NV
Sbjct: 47  PTVKYFNVFGSKCYIVADRDHRRKMDPKSDEGIFLGYSTNSRAYRVFNSRTKVVMESINV 106

Query: 181 VVDDTLVHTIGDDEAADDMFVQSPTTLAPEHFSTTPSTTNVPSHVESINAADSPSSEHES 360
           V+DD     + D E   +  VQ   T+           TN P  V      +    + E 
Sbjct: 107 VIDDVTEERVSDVEEDVETPVQETITV---------EETNTPLQVNDSETENEVIEQIEQ 157

Query: 361 PHTN 372
            HT+
Sbjct: 158 DHTS 161


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 60/145 (41%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
 Frame = +1

Query: 1    PNVQYFRIFGSPCYVCRDHENLSKFDTRGDKGILLGYSSNSRAFRVYNERTQTIMESCNV 180
            P V++F IFGSPCY+  D E   K D + D GI LGYS+NSRA+RV+N RT+T+MES NV
Sbjct: 915  PTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV 974

Query: 181  VVDDTL----------VHTIGDDEAADDMFVQSPTTLAPEHFSTTPSTTNVPSHVESINA 330
            VVDD            V T GD+ A         T  + E+   + S T+ P    +IN 
Sbjct: 975  VVDDLTPARKKDVEEDVRTSGDNVA--------DTAKSAENAENSDSATDEP----NINQ 1022

Query: 331  ADS-PSSEHESPHTNDLA---PNAG 393
             D  PS   +  H  +L    PN G
Sbjct: 1023 PDKRPSIRIQKMHPKELIIGDPNRG 1047


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
 Frame = +1

Query: 1    PNVQYFRIFGSPCYVCRDHENLSKFDTRGDKGILLGYSSNSRAFRVYNERTQTIMESCNV 180
            P V++F I GSPCY+  D E   K D + D GI LGYS+NSRA+RV+N RT+T+MES NV
Sbjct: 888  PTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV 947

Query: 181  VVDDTL----------VHTIGDDEAADDMFVQSPTTLAPEHFSTTPSTTNVPSHVESINA 330
            VVDD            V T GD+ A         T  + E+   + S T+ P    +IN 
Sbjct: 948  VVDDLTPARKKDVEEDVRTSGDNVA--------DTAKSAENAENSDSATDEP----NINQ 995

Query: 331  ADS-PSSEHESPHTNDLA---PNAG 393
             D  PS   +  H  +L    PN G
Sbjct: 996  PDKRPSIRIQKMHPKELIIGDPNRG 1020


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 10/85 (11%)
 Frame = +1

Query: 1    PNVQYFRIFGSPCYVCRDHENLSKFDTRGDKGILLGYSSNSRAFRVYNERTQTIMESCNV 180
            P+V++F IFGSPCY+  D E   K D + D GI LGYS+NSRA+RV+N RT+T+MES NV
Sbjct: 914  PSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV 973

Query: 181  VVDDTL----------VHTIGDDEA 225
            VVDD            V T+GD+ A
Sbjct: 974  VVDDLSPARKKDVEEDVRTLGDNVA 998


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
 Frame = +1

Query: 1    PNVQYFRIFGSPCYVCRDHENLSKFDTRGDKGILLGYSSNSRAFRVYNERTQTIMESCNV 180
            P V++F IFGSPCY+  D E   K D + D GI LGYS+NSRA+RV+N RT+T+MES NV
Sbjct: 914  PTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINV 973

Query: 181  VVDDTLVHTIGDDE-----AADDMFVQSPTTLAPEHFSTTPSTTNVPS 309
            VVDD       D E     + D++   + T  + E+   + STT+ P+
Sbjct: 974  VVDDLTPARKKDVEEDVRTSEDNV---ADTAKSAENAEKSDSTTDEPN 1018