BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030989
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN07997.1| contains similarity to reverse trancriptase , rel...    86   4e-15
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          85   5e-15
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    84   2e-14
ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [S...    83   2e-14
gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japo...    82   3e-14

>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
 Frame = -3

Query: 422 VLHKGLGWKIGDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVFDLIDSTTRKWRSNI 243
           V+ KG  W+IGDG SIN+  D+W+P  +G+    T   +     V DLI++    W   I
Sbjct: 197 VISKGSCWRIGDGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNRVKDLINNQESLWNKVI 256

Query: 242 IYHCWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHALH----------STN 93
           +   +      QI  IPL  + NPD  +W  +  G Y+VKSGY+ L           ST+
Sbjct: 257 LEDQFISINIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTS 316

Query: 92  TTPLFDWRIIWKLKCHPRVKVFMWKLSRDA 3
           +     W+ IW L   PR KV +W++  D+
Sbjct: 317 SDETLIWKKIWSLHTIPRHKVLLWRILNDS 346


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
 Frame = -3

Query: 422 VLHKGLGWKIGDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVFDLIDSTTRKWRSNI 243
           +L KG+ W+IG G ++   +D WIPG++  +       S     V D I +    W  N+
Sbjct: 157 LLQKGIEWRIGQGNTVRTWSDPWIPGSDTGLPKYHSPGSDLYTHVSDFIQNGG--WNENL 214

Query: 242 IYHCWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHA-----LHSTNTTPLF 78
           +  C+ E+   +I+ I LSL    D   W    +G+YTV+SGY+       H    TPL 
Sbjct: 215 LRLCFEEEDVTRILQIRLSLRRPLDMVRWKFIKDGEYTVRSGYYIDFNCWWHENYATPLT 274

Query: 77  D-----WRIIWKLKCHPRVKVFMWKL 15
                 W+  W L+C PR+K  +W+L
Sbjct: 275 HAGEERWKTCWGLRCPPRIKTLLWRL 300


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
 Frame = -3

Query: 428  RSVLHKGLGWKIGDGTSINLSTDSWIPGNEGVIAPITLTNSITPLFVFDLIDSTTRKWRS 249
            R +L KG+ W+IGDG  + +  D W+PG      PI    +   L V DL+ +    W  
Sbjct: 1202 RELLRKGVRWRIGDGKEVRVFIDPWVPGLPS-FRPILRQGAPLFLRVSDLLHNNGG-WNM 1259

Query: 248  NIIYHCWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHALHSTN-------- 93
              + + + +D  + I SI +  +  PD  +W    NG+YTVKSGY      N        
Sbjct: 1260 EALNYWFTDDECEAISSITVGATRRPDVYMWNYCKNGRYTVKSGYWLACEENREEAINIV 1319

Query: 92   TTPLFDWRIIWKLKCHPRVKVFMWKLS 12
              P   W+ +WKLK  P++  F+W+ S
Sbjct: 1320 LAPRNFWKHLWKLKLPPKINHFLWRCS 1346


>ref|XP_002444973.1| hypothetical protein SORBIDRAFT_07g002160 [Sorghum bicolor]
           gi|241941323|gb|EES14468.1| hypothetical protein
           SORBIDRAFT_07g002160 [Sorghum bicolor]
          Length = 469

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
 Frame = -3

Query: 419 LHKGLGWKIGDGTSINLSTDSWIPGNEGVI-APITLTNSITPLFVFDLIDSTTRKWRSNI 243
           L  GL W++GDGT IN+ TD WIP  +GV   P T         V +LID  + +W  N+
Sbjct: 83  LKDGLIWRVGDGTQINIWTDPWIP--QGVTRRPCTPRGQTILNKVSELIDPISGEWDRNL 140

Query: 242 IYHCWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHAL-------------- 105
           +   + E   K I+SIPL  +   D   W     G ++VKS YH L              
Sbjct: 141 VTDIFWEADVKNILSIPLK-NEMEDTLAWHYDPKGDFSVKSAYHVLTDMKELSKRRQIGE 199

Query: 104 -HSTNTTPL-FDWRIIWKLKCHPRVKVFMWKLSRDA 3
             ++  +P   +W  IWKL C P+VK+F W+ + ++
Sbjct: 200 ASASLISPCNNNWHKIWKLHCPPKVKLFFWRFTHNS 235


>gb|EEE69154.1| hypothetical protein OsJ_28290 [Oryza sativa Japonica Group]
          Length = 615

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
 Frame = -3

Query: 419 LHKGLGWKIGDGTSINLSTDSWIPGNEGVI-APITLTNSITPLFVFDLIDSTTRKWRSNI 243
           L KGL W++GDGT+I++  D W+P   G+   PIT         V DLID T  KW   +
Sbjct: 374 LKKGLIWRVGDGTNIDIWHDPWLP--SGITRRPITPRGRTVVNKVTDLIDPTIGKWDKEL 431

Query: 242 IYHCWPEDIAKQIISIPLSLSANPDERIWTLSVNGKYTVKSGYHALH------------- 102
           I   + E+  KQI++IP+      D   W     G ++VKS YH L              
Sbjct: 432 IEGLFWEEDVKQILTIPIRAGVE-DGLAWHFDNRGIFSVKSAYHVLEDERRRHKPKQDGA 490

Query: 101 ----STNTTPLFDWRIIWKLKCHPRVKVFMWKLSRDA 3
                TN   L  W+ IWKL   P+VK F+W L+ ++
Sbjct: 491 SSSGQTNMEKLC-WQQIWKLPYLPKVKHFIWHLAHNS 526