BLASTX nr result
ID: Coptis24_contig00030934
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030934
(347 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|2... 132 4e-29
ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containi... 130 1e-28
ref|XP_003611834.1| Pentatricopeptide repeat-containing protein ... 122 2e-26
ref|XP_002522354.1| pentatricopeptide repeat-containing protein,... 115 3e-24
gb|AFW59852.1| putative pentatricopeptide repeat family protein ... 110 1e-22
>ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|222856691|gb|EEE94238.1|
predicted protein [Populus trichocarpa]
Length = 561
Score = 132 bits (331), Expect = 4e-29
Identities = 64/114 (56%), Positives = 84/114 (73%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
VF KIE PDLVSWNS+I+GY EN +G AM++F+QL + + KPDEYTFA ISA
Sbjct: 168 VFNKIENPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFS 227
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVIV 345
+ YG PLHA V K G S+F+G+TL+SMYLK+G+I+SAE++ N I KDV++
Sbjct: 228 ATCYGKPLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVL 281
Score = 68.2 bits (165), Expect = 7e-10
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
VF IE D+V W +I G+ GE+A+ +F +C K D + + +SA DL
Sbjct: 270 VFNMIEGKDVVLWTEMIMGHSRLGGGESAIKLFSMMCHEG-YKIDSFALSGALSACADLA 328
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDV 339
+L+ G +H K G + I V +L+ MY K+G++ +A + + ++ D+
Sbjct: 329 TLNQGEMIHTQTVKRGCDAEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDL 380
Score = 54.7 bits (130), Expect = 8e-06
Identities = 30/104 (28%), Positives = 56/104 (53%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
+F ++ PDL WNS++ GY ++ E AM +F ++ +PD+ TF + +SA
Sbjct: 371 IFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFAKILVNGQ-RPDQVTFLSLLSACSHSG 429
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLL 315
++ G L +H++K S ++S+ + G +D AE+L+
Sbjct: 430 LVEEGKLLWSHIKKNDVIPGPKHYSCMVSLLSRAGLLDEAEELI 473
>ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g50420-like [Glycine max]
Length = 715
Score = 130 bits (327), Expect = 1e-28
Identities = 64/114 (56%), Positives = 83/114 (72%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
+F ++E PDLVSWNS+IAGY EN DGE AM++F+QL +M KPD+YT+A ISA P
Sbjct: 273 IFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIISATGVFP 332
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVIV 345
S YG LHA V K GF S+FVGSTL+SMY K+ E D+A ++ SI+ KDV++
Sbjct: 333 SSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVL 386
Score = 63.9 bits (154), Expect = 1e-08
Identities = 33/112 (29%), Positives = 59/112 (52%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
VF I D+V W +I GY + +DG A+ F Q+ + D+Y + ++A +L
Sbjct: 375 VFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGH-EVDDYVLSGVVNACANLA 433
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDV 339
L G +H + K G+ + V +LI MY K+G +++A + + ++E D+
Sbjct: 434 VLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDL 485
Score = 55.8 bits (133), Expect = 4e-06
Identities = 29/114 (25%), Positives = 59/114 (51%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 180
LVF + D V+WNS+I GY++N+ E + +FI++ + P ++T+ +++ L
Sbjct: 171 LVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVG-FAPTQFTYCMVLNSCSRL 229
Query: 181 PSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVI 342
G +HAHV + + + L+ MY G + +A ++ + + D++
Sbjct: 230 KDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLV 283
Score = 55.1 bits (131), Expect = 6e-06
Identities = 29/106 (27%), Positives = 58/106 (54%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 180
LVF ++ PDL WNS++ GY + E A+ VF ++ + +I PD+ TF + +SA
Sbjct: 475 LVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLI-PDQVTFLSLLSACSHS 533
Query: 181 PSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLN 318
++ G L ++ G + S +++++ + ++ AE+++N
Sbjct: 534 RLVEQGKFLWNYMNSIGLIPGLKHYSCMVTLFSRAALLEEAEEIIN 579
>ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513169|gb|AES94792.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 985
Score = 122 bits (307), Expect = 2e-26
Identities = 60/115 (52%), Positives = 80/115 (69%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 180
++F ++E DLVSWNS+I+GY EN DGE AM++F+QL + KPD+YT+A ISA
Sbjct: 542 MIFSRMEKWDLVSWNSMISGYFENEDGEKAMNLFVQLKALCFPKPDDYTYAGIISATGAF 601
Query: 181 PSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVIV 345
P YG PLH V KAGF S+FVGSTL+SMY K+ E ++A ++ SI KD I+
Sbjct: 602 PCFSYGKPLHGQVIKAGFVRSVFVGSTLVSMYFKNQETEAALRVFCSIPGKDAIL 656
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/112 (27%), Positives = 56/112 (50%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
VF I D + W +I GY + +DG A+ F ++ V + D+Y + +S L
Sbjct: 645 VFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEM-HHEVHEIDDYVLSGVLSVCAYLA 703
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDV 339
L G +H + K G+ + V +LI MY K+G +++A + + ++ D+
Sbjct: 704 ILRQGEIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAAYLVFSQVSHPDL 755
>ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538432|gb|EEF40038.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 704
Score = 115 bits (289), Expect = 3e-24
Identities = 50/114 (43%), Positives = 80/114 (70%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
+F +I+ P L+SWNS+I+ + +N +GE AM +F++L M+ KPDEYTF ISA +
Sbjct: 268 LFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFR 327
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVIV 345
+ DYG PLHA V KAG S+F+G+ L+SMY ++ ++++A + + + EKDV++
Sbjct: 328 ATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVL 381
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/112 (30%), Positives = 57/112 (50%)
Frame = +1
Query: 4 VFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDLP 183
VF +E D+V W +I G+ DGE+A+ +F ++ Q K D + + +S DL
Sbjct: 370 VFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGH-KSDSFALSGALSVCADLA 428
Query: 184 SLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDV 339
L G LH K G + I V +L+ MY K+G + +A+ + + + D+
Sbjct: 429 ILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDL 480
Score = 55.8 bits (133), Expect = 4e-06
Identities = 32/109 (29%), Positives = 58/109 (53%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 180
L+F ++ PDL WNS+I GY + E A+ +F ++ + + PD+ TF + +SA
Sbjct: 470 LIFSQVCNPDLKCWNSMIGGYSHHGMAEEAVMLFAEVLECG-LTPDQVTFLSLLSACNHS 528
Query: 181 PSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSIT 327
++ G L +++K G S ++S+ + G +D AE+L+ T
Sbjct: 529 GLVEKGKFLWDYMKKNGITPGPKHYSCMVSLLSRAGLLDEAEELITEST 577
>gb|AFW59852.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 554
Score = 110 bits (275), Expect = 1e-22
Identities = 56/117 (47%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAV--IKPDEYTFATTISAVR 174
LVFR+IE PDLVSWN++I+G+ +DG TA+ F++L ++ + PDEYTFA ++A
Sbjct: 115 LVFRRIETPDLVSWNTIISGFSGVADGWTAVQAFVKLKAVSSEWLAPDEYTFAAVVAAAA 174
Query: 175 DLPSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDVIV 345
LP++ G PLHA V KAG SS+FV +TL++MY + + +SA L +S+ KDVI+
Sbjct: 175 SLPAMCSGKPLHACVIKAGLESSVFVANTLLNMYFTNEDPESAHILFDSVMVKDVIM 231
Score = 65.5 bits (158), Expect = 4e-09
Identities = 31/113 (27%), Positives = 63/113 (55%)
Frame = +1
Query: 1 LVFRKIEFPDLVSWNSVIAGYMENSDGETAMSVFIQLCQMAVIKPDEYTFATTISAVRDL 180
++F + D++ W ++AG+ +GE ++ FI + ++ K D ++ ++ +++ DL
Sbjct: 219 ILFDSVMVKDVIMWTEMVAGHSALGEGELSLKYFIGMLEVGH-KADNFSLSSALNSAADL 277
Query: 181 PSLDYGSPLHAHVEKAGFGSSIFVGSTLISMYLKHGEIDSAEKLLNSITEKDV 339
L G LHA V K+G+ +I V +L+ MY K+G + A + +I + D+
Sbjct: 278 AGLKQGEMLHAQVVKSGYEGNICVSGSLVDMYAKNGTLLRAYSVFCTIQKPDL 330