BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030901
         (1025 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4,...   377   e-102
ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloropl...   365   7e-99
ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidop...   360   4e-97
ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|2...   359   5e-97
ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis t...   353   4e-95

>ref|XP_002265695.1| PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis
            vinifera] gi|302142754|emb|CBI19957.3| unnamed protein
            product [Vitis vinifera]
          Length = 279

 Score =  377 bits (968), Expect = e-102
 Identities = 191/288 (66%), Positives = 226/288 (78%), Gaps = 5/288 (1%)
 Frame = -2

Query: 1009 MGATLFTNYGFSMRCDHKSSHFQHSKEISKSKCTCLKALPEKGCSRAKTTQE-----CKV 845
            MG ++FT+  FS R  H          I  S      + P+KG S AK   +     C  
Sbjct: 1    MGTSIFTSCSFSWRNHH---------HIIPSHRFLSHSSPDKGLSVAKAAVDTRQNGCVE 51

Query: 844  VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 665
              ++  EK    LKRR+AIVS  SL+++A LGFP EGLAV+KQGLLAGR+PGLSEPD+QG
Sbjct: 52   FVDEETEKFSGFLKRRSAIVSGVSLISSAVLGFPREGLAVVKQGLLAGRVPGLSEPDEQG 111

Query: 664  WRTYRRPDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 485
            WRTYRRPDEKSGGHGVGWSPIIPY FSVP GWEEVPVSIADLGGTEIDLRFA+S+EGRL 
Sbjct: 112  WRTYRRPDEKSGGHGVGWSPIIPYIFSVPSGWEEVPVSIADLGGTEIDLRFANSKEGRLF 171

Query: 484  VVVAPVLRFADNLGEDVKIQNIGTPDKVISAFGPEVIGENVDGRVLSTEVMEYDGRMYYH 305
            V+VAPVLRFADNLG+D K++ IG P+KVI+AFGPEVIGENV+G+VLS  V+E+ GR YY 
Sbjct: 172  VIVAPVLRFADNLGDDAKVEKIGPPEKVIAAFGPEVIGENVEGKVLSMGVVEHSGRTYYQ 231

Query: 304  YELEPPHYLITATAAGNRLYLFNVTANGLQWKRHSKELKRISETFRVV 161
            +ELEPPH LITATAAGNRLYLF+VTA+GLQWKRH K+LK+I+++FRVV
Sbjct: 232  FELEPPHVLITATAAGNRLYLFSVTASGLQWKRHYKDLKKIADSFRVV 279


>ref|XP_002526176.1| Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative
            [Ricinus communis] gi|223534553|gb|EEF36252.1| Thylakoid
            lumenal 29.8 kDa protein, chloroplast precursor, putative
            [Ricinus communis]
          Length = 270

 Score =  365 bits (938), Expect = 7e-99
 Identities = 188/288 (65%), Positives = 222/288 (77%), Gaps = 5/288 (1%)
 Frame = -2

Query: 1009 MGATLFTNYGFSMRCDHK----SSHFQ-HSKEISKSKCTCLKALPEKGCSRAKTTQECKV 845
            MG T+FT+  F  +  H+    SSH   HS +             E G SR + T     
Sbjct: 1    MGTTIFTSCSFPWKYHHQQMVPSSHLLGHSSQ-------------ETGVSRIRAT----- 42

Query: 844  VEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQG 665
            +E    EK   +LKRR+A+VS  SL ++  LGFP +GLA +KQGLLAGRIPGLSEPD+QG
Sbjct: 43   IEPREFEKPIGLLKRRSALVSGISLASSTILGFPGDGLAAVKQGLLAGRIPGLSEPDEQG 102

Query: 664  WRTYRRPDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLS 485
            WRTYRRPD+KSGGHGVGWSPIIPY+F VPQ WEEVPVSIADLGGTEIDLRF+SS+EGRL 
Sbjct: 103  WRTYRRPDDKSGGHGVGWSPIIPYAFKVPQEWEEVPVSIADLGGTEIDLRFSSSKEGRLF 162

Query: 484  VVVAPVLRFADNLGEDVKIQNIGTPDKVISAFGPEVIGENVDGRVLSTEVMEYDGRMYYH 305
            V+VAPVLRFAD+LG++  I+ IG P+KVI+AFGPEVIGENV+G+VLS  V E+ GRMYY 
Sbjct: 163  VIVAPVLRFADDLGDNATIERIGPPEKVINAFGPEVIGENVEGKVLSMNVAEHSGRMYYQ 222

Query: 304  YELEPPHYLITATAAGNRLYLFNVTANGLQWKRHSKELKRISETFRVV 161
            +ELEPPH LITATAAGNRLYLF+VT NGLQWKRH K+LKRI+E+FRVV
Sbjct: 223  FELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIAESFRVV 270


>ref|XP_002889122.1| thylakoid lumenal 29.8 kDa protein [Arabidopsis lyrata subsp.
           lyrata] gi|297334963|gb|EFH65381.1| thylakoid lumenal
           29.8 kDa protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score =  360 bits (923), Expect = 4e-97
 Identities = 171/227 (75%), Positives = 198/227 (87%)
 Frame = -2

Query: 841 EEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGW 662
           E    E+    L RR+ + S FSLV++  L FP +GLAV+KQGLLAGR+PGLSEPD +GW
Sbjct: 30  ETQRDERCATALSRRSVLASGFSLVSSTALVFPGDGLAVVKQGLLAGRVPGLSEPDDEGW 89

Query: 661 RTYRRPDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSV 482
           RTYRRPDEKSGGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV
Sbjct: 90  RTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSV 149

Query: 481 VVAPVLRFADNLGEDVKIQNIGTPDKVISAFGPEVIGENVDGRVLSTEVMEYDGRMYYHY 302
           +VAPVLRFADNLG+DVKI+NIG P KVI+AFGPEVIGENV+G+VLS+ V E++GR+YY +
Sbjct: 150 IVAPVLRFADNLGDDVKIENIGPPAKVINAFGPEVIGENVEGKVLSSNVAEHEGRLYYQF 209

Query: 301 ELEPPHYLITATAAGNRLYLFNVTANGLQWKRHSKELKRISETFRVV 161
           ELEPPH LITATAAGNRLYLF+VT NGLQWKRH K+LKRI+ +FR+V
Sbjct: 210 ELEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 256


>ref|XP_002300943.1| predicted protein [Populus trichocarpa] gi|222842669|gb|EEE80216.1|
            predicted protein [Populus trichocarpa]
          Length = 276

 Score =  359 bits (922), Expect = 5e-97
 Identities = 193/291 (66%), Positives = 221/291 (75%), Gaps = 8/291 (2%)
 Frame = -2

Query: 1009 MGATLFTNYGFSMRCDHKS----SHF-QHSKEISKSKCTCLKALPEKGCSRAKTTQECK- 848
            MG TL T+ G   R  H+     +H   HS+E          + P    SRAK T E + 
Sbjct: 1    MGTTLLTSCGIQWRYHHQQIVPDNHLLSHSQE----------SFP----SRAKITAESRK 46

Query: 847  --VVEEDNVEKLCVVLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPD 674
               ++ +N EK    LKRR+ +VS  SLV+T+ LG   EGLAV+KQGLLAGRIPGLSEPD
Sbjct: 47   NGFLDGEN-EKSAGFLKRRSVLVSGVSLVSTSVLGSAGEGLAVVKQGLLAGRIPGLSEPD 105

Query: 673  KQGWRTYRRPDEKSGGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEG 494
             QGWRTYRRPD+KSGGHGVGWSPIIPY FSVPQGWEEVPVSIADLGGTEIDLRF SS+EG
Sbjct: 106  DQGWRTYRRPDDKSGGHGVGWSPIIPYLFSVPQGWEEVPVSIADLGGTEIDLRFGSSKEG 165

Query: 493  RLSVVVAPVLRFADNLGEDVKIQNIGTPDKVISAFGPEVIGENVDGRVLSTEVMEYDGRM 314
            RL V+VAPVLRFAD LGE+  I+ IG P+KVI+AFGPEVIGENV+G+VLS  V E+ GR 
Sbjct: 166  RLFVIVAPVLRFADYLGENATIEQIGPPEKVINAFGPEVIGENVEGKVLSMNVEEHSGRR 225

Query: 313  YYHYELEPPHYLITATAAGNRLYLFNVTANGLQWKRHSKELKRISETFRVV 161
            YY YELEPPH LITATAAGNRLYLFNVT NGLQWKRH ++LKRI+ +FRVV
Sbjct: 226  YYQYELEPPHALITATAAGNRLYLFNVTGNGLQWKRHYQDLKRIAYSFRVV 276


>ref|NP_565149.2| PsbP domain-containing protein 4 [Arabidopsis thaliana]
           gi|190358910|sp|O49292.2|PPD4_ARATH RecName: Full=PsbP
           domain-containing protein 4, chloroplastic; AltName:
           Full=OEC23-like protein 5; Flags: Precursor
           gi|332197812|gb|AEE35933.1| PsbP domain-containing
           protein 4 [Arabidopsis thaliana]
          Length = 260

 Score =  353 bits (906), Expect = 4e-95
 Identities = 171/217 (78%), Positives = 194/217 (89%)
 Frame = -2

Query: 811 VLKRRAAIVSVFSLVTTATLGFPSEGLAVLKQGLLAGRIPGLSEPDKQGWRTYRRPDEKS 632
           VL RR+ + S     TTA L FP EGLAV+KQGLLAGR+PGLSEPD++GWRTYRRPDEKS
Sbjct: 45  VLSRRSVMASGLVSSTTA-LAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKS 103

Query: 631 GGHGVGWSPIIPYSFSVPQGWEEVPVSIADLGGTEIDLRFASSQEGRLSVVVAPVLRFAD 452
           GGHGVGWSPIIPY+FSVPQ W EVPVSIADLGGTEIDLRFAS +EGRLSV+VAPVLRFAD
Sbjct: 104 GGHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFAD 163

Query: 451 NLGEDVKIQNIGTPDKVISAFGPEVIGENVDGRVLSTEVMEYDGRMYYHYELEPPHYLIT 272
           NLG+DVKI+NIG P KVI+AFGPEVIGENV+G+VLS+ V E+DGR+YY +ELEPPH LIT
Sbjct: 164 NLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLIT 223

Query: 271 ATAAGNRLYLFNVTANGLQWKRHSKELKRISETFRVV 161
           ATAAGNRLYLF+VT NGLQWKRH K+LKRI+ +FR+V
Sbjct: 224 ATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260