BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030830
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat...    73   2e-11
ref|NP_176501.1| pentatricopeptide repeat-containing protein [Ar...    72   5e-11
emb|CBI34156.3| unnamed protein product [Vitis vinifera]               71   1e-10
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...    71   1e-10
emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]    71   1e-10

>ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
 Frame = -1

Query: 216 VINGLCKAMNAGAALRLFKAMD----RPGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKG 49
           +ING+CK  +   A++L + +D    +P VE+YN IIDALCK   V++A  LF EM+ KG
Sbjct: 170 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 229

Query: 48  VTADIVTSTTLLKG 7
           ++AD+VT TTL+ G
Sbjct: 230 ISADVVTYTTLIYG 243



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
 Frame = -1

Query: 219 VVINGLCKAMNAGAALRLFKAMDR----PGVEIYNMIIDALCKEDRVNDAIRLFQEMSGK 52
           ++ING CK      AL LFK M +    PG+  Y+ +ID LCK  R++    L  EM  +
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403

Query: 51  GVTADIVTSTTLLKGL 4
           G+ A+++T  +L+ GL
Sbjct: 404 GIPANVITYNSLIDGL 419


>ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
           gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein;
           64081-65973 [Arabidopsis thaliana]
           gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis
           thaliana] gi|23197834|gb|AAN15444.1| unknown protein
           [Arabidopsis thaliana] gi|332195938|gb|AEE34059.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
 Frame = -1

Query: 219 VVINGLCKAMNAGAALRLFKAMDR----PGVEIYNMIIDALCKEDRVNDAIRLFQEMSGK 52
           +V+NGLCK  +   AL L K M++    PGV IYN IIDALC    VNDA+ LF EM  K
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285

Query: 51  GVTADIVTSTTLLKGL 4
           G+  ++VT  +L++ L
Sbjct: 286 GIRPNVVTYNSLIRCL 301


>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
 Frame = -1

Query: 216 VINGLCKAMNAGAALRLFKAMDR----PGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKG 49
           +INGLCK  N  AA+RL ++M++    P V IY  IID+LCK+ +V +A  LF +M G+G
Sbjct: 156 LINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQG 215

Query: 48  VTADIVTSTTLLKGL 4
           ++ DI T T+L+  L
Sbjct: 216 ISPDIFTYTSLVHAL 230


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
 Frame = -1

Query: 216 VINGLCKAMNAGAALRLFKAMDR----PGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKG 49
           +INGLCK  N  AA+RL ++M++    P V IY  IID+LCK+ +V +A  LF +M G+G
Sbjct: 167 LINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQG 226

Query: 48  VTADIVTSTTLLKGL 4
           ++ DI T T+L+  L
Sbjct: 227 ISPDIFTYTSLVHAL 241


>emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
 Frame = -1

Query: 216 VINGLCKAMNAGAALRLFKAMDR----PGVEIYNMIIDALCKEDRVNDAIRLFQEMSGKG 49
           +INGLCK  N  AA+RL ++M++    P V IY  IID+LCK+ +V +A  LF +M G+G
Sbjct: 176 LINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQG 235

Query: 48  VTADIVTSTTLLKGL 4
           ++ DI T T+L+  L
Sbjct: 236 ISPDIFTYTSLVHAL 250