BLASTX nr result
ID: Coptis24_contig00030810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030810
(405 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 179 2e-43
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 175 4e-42
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 175 4e-42
ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat... 172 2e-41
ref|NP_196258.1| pentatricopeptide repeat-containing protein [Ar... 160 8e-38
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 179 bits (455), Expect = 2e-43
Identities = 82/133 (61%), Positives = 107/133 (80%)
Frame = -2
Query: 404 NIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAF 225
N+ L+P +FE LVKGLCR +I+DA EIV IMK+ VVD +YG II+GYLRRN++ KAF
Sbjct: 375 NLTLEPNDFETLVKGLCRADRITDAAEIVDIMKKRKVVDAKVYGIIISGYLRRNDIPKAF 434
Query: 224 DMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGH 45
D+ ++M ESG+ P S+YTELMQ+LFR +EY + CKLY EMLE G++PD VA+TA+VAGH
Sbjct: 435 DVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGVEPDSVAITAMVAGH 494
Query: 44 IQNNHVPEAWKVF 6
++ NH+ EAWKVF
Sbjct: 495 VRQNHIFEAWKVF 507
Score = 84.7 bits (208), Expect = 7e-15
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = -2
Query: 389 PENFEVLVKGLCRDGKISDALEIVSIMKQNHV-VDGNIYGSIINGYLRRNEVSKAFDMFR 213
P ++ + ++ LCR G++ +AL +V + V +D IYGS+++G LRR + +A +
Sbjct: 838 PLSYSLYIRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVD 897
Query: 212 SMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQNN 33
SMK+ G P YT L+ + F+ + +A + + +M E G +P IV +AL+ GH+
Sbjct: 898 SMKQIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMG 957
Query: 32 HVPEAWKVF 6
+ +A VF
Sbjct: 958 NFVDARNVF 966
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 175 bits (443), Expect = 4e-42
Identities = 84/133 (63%), Positives = 105/133 (78%)
Frame = -2
Query: 401 IMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFD 222
I LD E E LVKGL R +I+DALEIV IMK+ VDG +YG IINGYLRRNE+SKA D
Sbjct: 375 IQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFVDGKVYGIIINGYLRRNELSKALD 434
Query: 221 MFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHI 42
+F+SMKE GH P S+YTELMQ+LFRS+EY + C+LY EMLE G++ D VA+ A+VAGH+
Sbjct: 435 LFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHV 494
Query: 41 QNNHVPEAWKVFE 3
+ +H+ EAW+VFE
Sbjct: 495 RQDHISEAWEVFE 507
Score = 81.6 bits (200), Expect = 6e-14
Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = -2
Query: 389 PENFEVLVKGLCRDGKISDALEIVS-IMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMFR 213
P ++ + ++ LCR G + +AL +V + + +D + S+++G L++ + +A
Sbjct: 837 PASYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVD 896
Query: 212 SMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQNN 33
SMK+ G P YT L+ + FR ++A +++ M + G +P IV +AL+ G++
Sbjct: 897 SMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTE 956
Query: 32 HVPEAWKVF 6
+V EAW VF
Sbjct: 957 NVIEAWNVF 965
Score = 55.5 bits (132), Expect = 5e-06
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = -2
Query: 395 LDPENFEVLVKGLCRDGKISDALEIVSIMKQ---NHVVDGNIYGSIINGYLRRNEVSKAF 225
LD LV GL + G++ +AL V MKQ N V ++Y S+I + R SKA
Sbjct: 870 LDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTV--HVYTSLIVHFFREKLASKAL 927
Query: 224 DMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPD 78
++F SMK+ G P +Y+ L++ + EA ++H + G PD
Sbjct: 928 EIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPD 976
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 175 bits (443), Expect = 4e-42
Identities = 84/133 (63%), Positives = 105/133 (78%)
Frame = -2
Query: 401 IMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFD 222
I LD E E LVKGL R +I+DALEIV IMK+ VDG +YG IINGYLRRNE+SKA D
Sbjct: 375 IQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFVDGKVYGIIINGYLRRNELSKALD 434
Query: 221 MFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHI 42
+F+SMKE GH P S+YTELMQ+LFRS+EY + C+LY EMLE G++ D VA+ A+VAGH+
Sbjct: 435 LFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHV 494
Query: 41 QNNHVPEAWKVFE 3
+ +H+ EAW+VFE
Sbjct: 495 RQDHISEAWEVFE 507
Score = 81.6 bits (200), Expect = 6e-14
Identities = 38/129 (29%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = -2
Query: 389 PENFEVLVKGLCRDGKISDALEIVS-IMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMFR 213
P ++ + ++ LCR G + +AL +V + + +D + S+++G L++ + +A
Sbjct: 837 PASYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVD 896
Query: 212 SMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQNN 33
SMK+ G P YT L+ + FR ++A +++ M + G +P IV +AL+ G++
Sbjct: 897 SMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTE 956
Query: 32 HVPEAWKVF 6
+V EAW VF
Sbjct: 957 NVIEAWNVF 965
Score = 55.5 bits (132), Expect = 5e-06
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = -2
Query: 395 LDPENFEVLVKGLCRDGKISDALEIVSIMKQ---NHVVDGNIYGSIINGYLRRNEVSKAF 225
LD LV GL + G++ +AL V MKQ N V ++Y S+I + R SKA
Sbjct: 870 LDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTV--HVYTSLIVHFFREKLASKAL 927
Query: 224 DMFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPD 78
++F SMK+ G P +Y+ L++ + EA ++H + G PD
Sbjct: 928 EIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPD 976
>ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 172 bits (437), Expect = 2e-41
Identities = 78/131 (59%), Positives = 104/131 (79%)
Frame = -2
Query: 395 LDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMF 216
L+PEN+E LV+GLC+ G+I+DALEIV IMK+ +VDG ++G IINGYL RN+V +A ++F
Sbjct: 363 LEPENYETLVRGLCKAGRITDALEIVDIMKRRDMVDGRVHGIIINGYLGRNDVDRALEVF 422
Query: 215 RSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQN 36
+ MKESG P S+YTELM +LFR Y EAC LY EML GI+PD+VA+TA+VAGH+
Sbjct: 423 QCMKESGCVPTISTYTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQ 482
Query: 35 NHVPEAWKVFE 3
NH+ +AWK+F+
Sbjct: 483 NHISDAWKMFK 493
Score = 85.9 bits (211), Expect = 3e-15
Identities = 39/129 (30%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Frame = -2
Query: 389 PENFEVLVKGLCRDGKISDALEI-VSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMFR 213
P ++ + ++ LCR GK+ +AL + + ++ ++D +GSI++G LR+ + +A
Sbjct: 822 PLSYSLFIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVD 881
Query: 212 SMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQNN 33
MK++G TP +T L+ + F+ + +A + + EML SG +P IV +AL+ G++
Sbjct: 882 VMKQNGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVG 941
Query: 32 HVPEAWKVF 6
+AW +F
Sbjct: 942 RPIDAWDIF 950
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = -2
Query: 398 MLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDG-NIYGSIINGYLRRNEVSKAFD 222
++D F +V GL R G++ +AL V +MKQN + +++ S+I + + +V KA +
Sbjct: 854 IIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPTIHVFTSLIVHFFKEKQVEKAIE 913
Query: 221 MFRSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPD 78
F M SG+ P +Y+ L++ +A +++ M G PD
Sbjct: 914 TFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFYRMKLKGPFPD 961
>ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product
[Arabidopsis thaliana] gi|332003627|gb|AED91010.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1030
Score = 160 bits (406), Expect = 8e-38
Identities = 73/130 (56%), Positives = 102/130 (78%)
Frame = -2
Query: 395 LDPENFEVLVKGLCRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMF 216
LD + FE+LVKGLCR ++ DALEIV IMK+ + D N+YG II+GYLR+N+VSKA + F
Sbjct: 362 LDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQF 421
Query: 215 RSMKESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQN 36
+K+SG P+ S+YTE+MQ+LF+ ++ + C L++EM+E+GI+PD VA+TA+VAGH+
Sbjct: 422 EVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQ 481
Query: 35 NHVPEAWKVF 6
N V EAWKVF
Sbjct: 482 NRVAEAWKVF 491
Score = 88.2 bits (217), Expect = 6e-16
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = -2
Query: 380 FEVLVKGLCRDGKISDAL-EIVSIMKQNHVVDGNIYGSIINGYLRRNEVSKAFDMFRSMK 204
+ + ++ LCR GK+ +AL E+ S + ++D YGSI++G L+R ++ KA D SMK
Sbjct: 822 YSIYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMK 881
Query: 203 ESGHTPKASSYTELMQYLFRSSEYNEACKLYHEMLESGIQPDIVAMTALVAGHIQNNHVP 24
E G P YT L+ Y F+ + + + +M +P +V TA++ G++ V
Sbjct: 882 EIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVE 941
Query: 23 EAWKVF 6
EAW F
Sbjct: 942 EAWNAF 947