BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030718
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK39673.1| unknown [Medicago truncatula]                           67   2e-09
ref|XP_003555302.1| PREDICTED: ribosomal RNA small subunit methy...    66   3e-09
emb|CBI25132.3| unnamed protein product [Vitis vinifera]               61   8e-08
ref|XP_002271957.1| PREDICTED: ribosomal RNA small subunit methy...    61   8e-08
ref|XP_003535680.1| PREDICTED: ribosomal RNA small subunit methy...    60   2e-07

>gb|AFK39673.1| unknown [Medicago truncatula]
          Length = 280

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/66 (53%), Positives = 42/66 (63%)
 Frame = -3

Query: 199 MQTLLPRPRFPNFLITSCRKVSVFYASYKPDYSNQSRGVLPRFYSDTLPPSKGEVVRVMG 20
           +QTL+   RF      S R+      S+  DY +QSRG LPRFYS+ LPPSKG V+RV G
Sbjct: 2   LQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVKG 61

Query: 19  DEFHHM 2
           DEF HM
Sbjct: 62  DEFWHM 67


>ref|XP_003555302.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
           [Glycine max]
          Length = 281

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = -3

Query: 127 YASYKPDYSNQSRGVLPRFYSDTLPPSKGEVVRVMGDEFHHM 2
           ++S   DY +QSRG LPRFYS+TLPPSKG V+RV GDEF HM
Sbjct: 3   FSSSSSDYGDQSRGGLPRFYSETLPPSKGSVIRVQGDEFWHM 44


>emb|CBI25132.3| unnamed protein product [Vitis vinifera]
          Length = 410

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = -3

Query: 199 MQTLLPRPRFPNFLITSCRKVSVF--YASYKPDYSNQSRGVLPRFYSDTLPPSKGEVVRV 26
           MQ L    RF   L  S R+ +    ++S    +S+QSRG LPRF+S+ LPPSKG +VRV
Sbjct: 124 MQALGGGYRFAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIVRV 183

Query: 25  MGDEFHHM 2
            GDEF HM
Sbjct: 184 QGDEFWHM 191


>ref|XP_002271957.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
           [Vitis vinifera]
          Length = 287

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = -3

Query: 199 MQTLLPRPRFPNFLITSCRKVSVF--YASYKPDYSNQSRGVLPRFYSDTLPPSKGEVVRV 26
           MQ L    RF   L  S R+ +    ++S    +S+QSRG LPRF+S+ LPPSKG +VRV
Sbjct: 1   MQALGGGYRFAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIVRV 60

Query: 25  MGDEFHHM 2
            GDEF HM
Sbjct: 61  QGDEFWHM 68


>ref|XP_003535680.1| PREDICTED: ribosomal RNA small subunit methyltransferase E-like
           [Glycine max]
          Length = 197

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/59 (52%), Positives = 36/59 (61%)
 Frame = -3

Query: 178 PRFPNFLITSCRKVSVFYASYKPDYSNQSRGVLPRFYSDTLPPSKGEVVRVMGDEFHHM 2
           PRF N        V     S   D+ +Q+RG LPRFYS+TLPPSKG V+RV  DEF HM
Sbjct: 12  PRFVNRSWLRNLTVRAMALSSSSDHGDQTRGGLPRFYSETLPPSKGSVIRVQCDEFWHM 70