BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030701
         (1167 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containi...   291   3e-76
ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|2...   266   7e-69
ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containi...   261   3e-67
emb|CBI32533.3| unnamed protein product [Vitis vinifera]              254   3e-65
ref|XP_002519113.1| pentatricopeptide repeat-containing protein,...   251   2e-64

>ref|XP_002281132.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like
            [Vitis vinifera]
          Length = 492

 Score =  291 bits (744), Expect = 3e-76
 Identities = 135/242 (55%), Positives = 187/242 (77%)
 Frame = -2

Query: 1166 LLCFYQDGIMERVEEIWDEMCKHSMCCRPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVK 987
            ++CFY+DG +E+VEEIW EM +    C PN YSYSVL+AAFCD+G+MGE  +LW+EMR+K
Sbjct: 252  MVCFYRDGGVEKVEEIWAEMGEWD--CNPNAYSYSVLMAAFCDEGRMGEVEKLWEEMRMK 309

Query: 986  EVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESA 807
            +++ D+MAYNT+I G C   E+ER E++FR+ME+  I++TC+T+EHLI GYCE GDV+SA
Sbjct: 310  KMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEHLINGYCEIGDVDSA 369

Query: 806  MLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRSYEFLI 627
            +LLY++MCR K FR E  TV+ +I  +C   ++ +ALK  R A+      P G+SYE LI
Sbjct: 370  VLLYKDMCR-KGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGNVEFAPRGKSYETLI 428

Query: 626  RGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMVDFGLK 447
            +G CEEGKME+A KLQ+EMVGKGF+P++EIY+ FI GY +QGN+E++  LRKEM +  ++
Sbjct: 429  KGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEIAETLRKEMFETQMQ 488

Query: 446  QE 441
            QE
Sbjct: 489  QE 490



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 38/269 (14%)
 Frame = -2

Query: 1106 CKHSMCCRPNVYSYSVLLAAFCDQ-------GKMGEAMRLWDEMRVKEVKPD------VM 966
            C H   C   + SYS ++             G +  A+R++D+      +P       V 
Sbjct: 90   CHHKSLCNHTLLSYSTIIHILARARLKSQALGLIRTAIRVFDDSDECSSQPPKIFESLVK 149

Query: 965  AYNT----------LIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDV 816
             YN+          LIK    ++ +E++  I + +    I  T  T   LI         
Sbjct: 150  TYNSCGSAPFVFDLLIKACLNSKRIEQSISIVKMLRSRGISPTISTCNALIWQVSRGRGC 209

Query: 815  ESAMLLYRNMCRT--KEFRPEVFTVEEVIRAMCGKNKIFDALK--FFRDA---------- 678
            ++   +YR +  +   E   +V     V   +C     F+AL   F+RD           
Sbjct: 210  DAGYEIYREVFGSWDDEINEKVRVRVRVRVRVCPNVHTFNALMVCFYRDGGVEKVEEIWA 269

Query: 677  -VKRHGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQG 501
             +      P+  SY  L+   C+EG+M +  KL  EM  K  E  +  YN  I G+ R G
Sbjct: 270  EMGEWDCNPNAYSYSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIG 329

Query: 500  NEELSRNLRKEMVDFGLKQEGDEQDELTN 414
              E    L +EM   G++      + L N
Sbjct: 330  EIERGEELFREMELSGIQSTCVTYEHLIN 358


>ref|XP_002306075.1| predicted protein [Populus trichocarpa] gi|222849039|gb|EEE86586.1|
            predicted protein [Populus trichocarpa]
          Length = 498

 Score =  266 bits (680), Expect = 7e-69
 Identities = 129/248 (52%), Positives = 181/248 (72%)
 Frame = -2

Query: 1157 FYQDGIMERVEEIWDEMCKHSMCCRPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVKEVK 978
            FY++G +E VEEIW EM +    C  N +SY VL+A FC+ G++ EA RLWDEMRVK + 
Sbjct: 257  FYRNGEVEMVEEIWSEMERFG--CVANGFSYGVLIAVFCEGGRLSEAERLWDEMRVKGIM 314

Query: 977  PDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESAMLL 798
            PDV+AYNT+I G C+  E+E+AE +FR+M +  IE++C+TFEHLI GYC  GDV SA+L+
Sbjct: 315  PDVVAYNTIIGGFCKAGEVEKAEGLFREMGLSGIESSCVTFEHLIEGYCRIGDVNSAILV 374

Query: 797  YRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRSYEFLIRGL 618
            Y++M R ++FR E  T+E +I  +C + ++F+ALK  R A++     P+G+SYE LI GL
Sbjct: 375  YKDM-RRRDFRLEALTMEVLIGGLCEQKRVFEALKIMRSAMRDVSFHPNGKSYELLINGL 433

Query: 617  CEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMVDFGLKQEG 438
            CE+GKME+ALKLQ+EMVGKGF+P+  IY  FI GY + GNEE++  LRKEM    + Q+ 
Sbjct: 434  CEDGKMEEALKLQSEMVGKGFDPNSAIYGAFIEGYVKLGNEEMAAMLRKEM---SVAQKQ 490

Query: 437  DEQDELTN 414
             ++D +T+
Sbjct: 491  QQEDNVTD 498


>ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like
            [Glycine max]
          Length = 487

 Score =  261 bits (666), Expect = 3e-67
 Identities = 120/236 (50%), Positives = 179/236 (75%), Gaps = 1/236 (0%)
 Frame = -2

Query: 1166 LLCFYQDGIMERVEEIWDEM-CKHSMCCRPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRV 990
            +LC YQDG++ERVE+IW EM C +    +PN YSYSVL+A FCD+G+MG+A +LW+E+R 
Sbjct: 251  MLCCYQDGLVERVEKIWIEMKCNY----KPNAYSYSVLMATFCDEGRMGDAEKLWEELRS 306

Query: 989  KEVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVES 810
            ++++PDV++YNT+I G C   ++ RAE+ FR+M +  +  T  T+EHL++GYC  GDV+S
Sbjct: 307  EKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMAVAGVGTTASTYEHLVKGYCNIGDVDS 366

Query: 809  AMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRSYEFL 630
            A+L+Y++M R+ + RP+  T++ +IR +C K ++ ++L+F R AV +  L P  +SYE L
Sbjct: 367  AVLVYKDMARS-DLRPDASTLDVMIRLLCDKGRVRESLEFVRCAVGKFDLIPMEKSYEAL 425

Query: 629  IRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMV 462
            I+GLC +G+ME+ALK+Q EMVGKGF+P+ EIY  F+ GY R GNEE++  LRKEM+
Sbjct: 426  IKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRHGNEEMAEALRKEML 481



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
 Frame = -2

Query: 962 YNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESAMLLYRNMC 783
           ++ LIK   ++++++ + +I R +    I     T   LI   C++  V+    +YR   
Sbjct: 163 FDLLIKACLDSKKLDPSIEIVRMLLSRGISPKVSTLNSLISRVCKSRGVDEGYAIYREFF 222

Query: 782 RTKE-----------FR--PEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRS 642
           R  E           FR  P V T  +++   C ++ + + ++     +K +   P+  S
Sbjct: 223 RLDEENNEISKRGSGFRVTPNVHTYNDLMLC-CYQDGLVERVEKIWIEMKCN-YKPNAYS 280

Query: 641 YEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMV 462
           Y  L+   C+EG+M DA KL  E+  +  EP V  YN  I G+   G+   +    +EM 
Sbjct: 281 YSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAEEFFREMA 340

Query: 461 DFGL 450
             G+
Sbjct: 341 VAGV 344


>emb|CBI32533.3| unnamed protein product [Vitis vinifera]
          Length = 299

 Score =  254 bits (649), Expect = 3e-65
 Identities = 117/209 (55%), Positives = 163/209 (77%)
 Frame = -2

Query: 1067 YSVLLAAFCDQGKMGEAMRLWDEMRVKEVKPDVMAYNTLIKGLCENREMERAEDIFRQME 888
            YSVL+AAFCD+G+MGE  +LW+EMR+K+++ D+MAYNT+I G C   E+ER E++FR+ME
Sbjct: 90   YSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREME 149

Query: 887  MDRIEATCLTFEHLIRGYCEAGDVESAMLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKI 708
            +  I++TC+T+EHLI GYCE GDV+SA+LLY++MCR K FR E  TV+ +I  +C   ++
Sbjct: 150  LSGIQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCR-KGFRAEARTVDGMILLLCNNRRV 208

Query: 707  FDALKFFRDAVKRHGLCPSGRSYEFLIRGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNC 528
             +ALK  R A+      P G+SYE LI+G CEEGKME+A KLQ+EMVGKGF+P++EIY+ 
Sbjct: 209  HEALKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSA 268

Query: 527  FISGYSRQGNEELSRNLRKEMVDFGLKQE 441
            FI GY +QGN+E++  LRKEM +  ++QE
Sbjct: 269  FIDGYMKQGNKEIAETLRKEMFETQMQQE 297


>ref|XP_002519113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541776|gb|EEF43324.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  251 bits (641), Expect = 2e-64
 Identities = 122/242 (50%), Positives = 173/242 (71%)
 Frame = -2

Query: 1166 LLCFYQDGIMERVEEIWDEMCKHSMCCRPNVYSYSVLLAAFCDQGKMGEAMRLWDEMRVK 987
            ++ FY+DG +E VEE+W EM +    C PN +SYSVL+  F D G+  E  +LW+EMR K
Sbjct: 246  MMGFYRDGELEMVEEVWSEMERFE--CVPNGFSYSVLMTVFLDVGRTKEIEKLWEEMRAK 303

Query: 986  EVKPDVMAYNTLIKGLCENREMERAEDIFRQMEMDRIEATCLTFEHLIRGYCEAGDVESA 807
             +K DV+AYNT+I G C+  E+E+AE++ R+ME++ +EA C+TFEHLI GYC  GDV+SA
Sbjct: 304  GIKGDVVAYNTVIGGFCKIGEIEKAEELSREMELNGVEANCVTFEHLINGYCSVGDVDSA 363

Query: 806  MLLYRNMCRTKEFRPEVFTVEEVIRAMCGKNKIFDALKFFRDAVKRHGLCPSGRSYEFLI 627
            +L++++M R K FR E   ++ +I  +C K ++ +AL+  R A++  G   SG+SYE LI
Sbjct: 364  ILVFKHMVR-KGFRAEGSVMDVLIGGLCEKRRVSEALEIMRIAMRNDGFRLSGKSYELLI 422

Query: 626  RGLCEEGKMEDALKLQTEMVGKGFEPSVEIYNCFISGYSRQGNEELSRNLRKEMVDFGLK 447
            +GLC++GKM++ALKLQ EMVG GFEP+ EIY  FI GY + GNEE++  LRKEM     +
Sbjct: 423  KGLCKDGKMDEALKLQAEMVGGGFEPNFEIYGAFIDGYMKLGNEEMAAMLRKEMSGIQKR 482

Query: 446  QE 441
            QE
Sbjct: 483  QE 484