BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030672
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...   110   9e-23
ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3...   109   2e-22
ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana] gi...   109   3e-22
emb|CBI37517.3| unnamed protein product [Vitis vinifera]              108   5e-22
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   108   5e-22

>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
           lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
           ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score =  110 bits (276), Expect = 9e-23
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
 Frame = -1

Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111
           LWKP LR+LMERD+ EVS GRK K+  LET LQ MKA F DAR+KK+KL E M  FF+RS
Sbjct: 565 LWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERS 624

Query: 110 NRT--GGDRTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3
           N T     +T G+++ RC +C   DM L+K  DGNFMV
Sbjct: 625 NNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNFMV 662


>ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1|
           DNA topoisomerase [Medicago truncatula]
          Length = 432

 Score =  109 bits (273), Expect = 2e-22
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
 Frame = -1

Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111
           LWKP+LR++MERD+K VSEG K K+  L+T+LQ MK  F DARL K KL E M  FF+R 
Sbjct: 38  LWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDARLNKVKLLEAMAIFFERL 97

Query: 110 NRTGGDRT--VGDIVCRCGVCANFDMVLKKKPDGNFMV 3
           NR G D     G +V RC +C   DMVLKK  DGNFMV
Sbjct: 98  NRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMV 135


>ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
           gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
           [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
           topoisomerase 3 alpha [Arabidopsis thaliana]
           gi|332010433|gb|AED97816.1| DNA topoisomerase III
           [Arabidopsis thaliana]
          Length = 926

 Score =  109 bits (272), Expect = 3e-22
 Identities = 57/98 (58%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
 Frame = -1

Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111
           LWKP LR+LME D+ EVS GRK K+  LET LQ MKA F DAR+KK+KL E M  FF+RS
Sbjct: 565 LWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERS 624

Query: 110 NRT--GGDRTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3
           N T     +T G++V RC +C   DM L+K  DGNFMV
Sbjct: 625 NNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMV 662


>emb|CBI37517.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  108 bits (270), Expect = 5e-22
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
 Frame = -1

Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111
           LWKP LRS+ME D+K VS G K ++  L T L+ MKA F DARL K KL E M  FF+RS
Sbjct: 232 LWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERS 291

Query: 110 NRTGGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3
           NR+ GD    VGD+V +C +C   DMVL++KPDGNFMV
Sbjct: 292 NRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMV 329


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  108 bits (270), Expect = 5e-22
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%)
 Frame = -1

Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111
           LWKP LRS+ME D+K VS G K ++  L T L+ MKA F DARL K KL E M  FF+RS
Sbjct: 557 LWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERS 616

Query: 110 NRTGGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3
           NR+ GD    VGD+V +C +C   DMVL++KPDGNFMV
Sbjct: 617 NRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMV 654