BLASTX nr result
ID: Coptis24_contig00030672
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00030672 (293 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab... 110 9e-23 ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3... 109 2e-22 ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana] gi... 109 3e-22 emb|CBI37517.3| unnamed protein product [Vitis vinifera] 108 5e-22 ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ... 108 5e-22 >ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata] Length = 923 Score = 110 bits (276), Expect = 9e-23 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%) Frame = -1 Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111 LWKP LR+LMERD+ EVS GRK K+ LET LQ MKA F DAR+KK+KL E M FF+RS Sbjct: 565 LWKPNLRALMERDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERS 624 Query: 110 NRT--GGDRTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3 N T +T G+++ RC +C DM L+K DGNFMV Sbjct: 625 NNTDESESQTAGEVIRRCNLCNESDMALRKNRDGNFMV 662 >ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1| DNA topoisomerase [Medicago truncatula] Length = 432 Score = 109 bits (273), Expect = 2e-22 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 2/98 (2%) Frame = -1 Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111 LWKP+LR++MERD+K VSEG K K+ L+T+LQ MK F DARL K KL E M FF+R Sbjct: 38 LWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDARLNKVKLLEAMAIFFERL 97 Query: 110 NRTGGDRT--VGDIVCRCGVCANFDMVLKKKPDGNFMV 3 NR G D G +V RC +C DMVLKK DGNFMV Sbjct: 98 NRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMV 135 >ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana] gi|8777305|dbj|BAA96895.1| DNA topoisomerase III [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1| topoisomerase 3 alpha [Arabidopsis thaliana] gi|332010433|gb|AED97816.1| DNA topoisomerase III [Arabidopsis thaliana] Length = 926 Score = 109 bits (272), Expect = 3e-22 Identities = 57/98 (58%), Positives = 68/98 (69%), Gaps = 2/98 (2%) Frame = -1 Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111 LWKP LR+LME D+ EVS GRK K+ LET LQ MKA F DAR+KK+KL E M FF+RS Sbjct: 565 LWKPNLRALMEHDMNEVSVGRKTKAEVLETCLQQMKACFLDARVKKSKLLEAMTIFFERS 624 Query: 110 NRT--GGDRTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3 N T +T G++V RC +C DM L+K DGNFMV Sbjct: 625 NNTDESESQTAGEVVRRCNLCNESDMALRKNRDGNFMV 662 >emb|CBI37517.3| unnamed protein product [Vitis vinifera] Length = 589 Score = 108 bits (270), Expect = 5e-22 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%) Frame = -1 Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111 LWKP LRS+ME D+K VS G K ++ L T L+ MKA F DARL K KL E M FF+RS Sbjct: 232 LWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERS 291 Query: 110 NRTGGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3 NR+ GD VGD+V +C +C DMVL++KPDGNFMV Sbjct: 292 NRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMV 329 >ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera] Length = 914 Score = 108 bits (270), Expect = 5e-22 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 2/98 (2%) Frame = -1 Query: 290 LWKPELRSLMERDIKEVSEGRKLKSVALETNLQLMKARFSDARLKKAKLEEIMEFFFDRS 111 LWKP LRS+ME D+K VS G K ++ L T L+ MKA F DARL K KL E M FF+RS Sbjct: 557 LWKPYLRSMMECDMKAVSIGTKRRNEVLTTCLEQMKACFLDARLNKVKLLEAMALFFERS 616 Query: 110 NRTGGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMV 3 NR+ GD VGD+V +C +C DMVL++KPDGNFMV Sbjct: 617 NRSSGDEQHEVGDVVRQCTLCQESDMVLRRKPDGNFMV 654