BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030622
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    57   2e-11
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    52   2e-10
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]    49   6e-10
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    53   1e-09
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]    48   1e-09

>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score = 57.0 bits (136), Expect(2) = 2e-11
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
 Frame = -1

Query: 469 FQASVYLINRQP--FTTRLT*CENSQTST*LYFS-RSLDAHAYYRVKLCTQHKLDYKAKP 299
           FQA+VYLINR P      LT  E+    T  Y S R      +  ++    HKL +++K 
Sbjct: 645 FQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQ 704

Query: 298 CAFVGYSIIFKGYRCLDISTG 236
           C F+GYS + KG++CLD STG
Sbjct: 705 CTFLGYSTLHKGFKCLDPSTG 725



 Score = 37.4 bits (85), Expect(2) = 2e-11
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -3

Query: 572 YFSRTYTPQQNGVVERKHSHILETSRTLMAHS 477
           + S  +T QQNG  ERKH HI+E   TL+A+S
Sbjct: 603 HVSCPHTHQQNGSAERKHRHIVEVGLTLLAYS 634


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score = 51.6 bits (122), Expect(2) = 2e-10
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
 Frame = -1

Query: 469 FQASVYLINRQP-----FTTRLT*CENSQTST*LYFS-RSLDAHAYYRVKLCTQHKLDYK 308
           F A+ YLINR P     F T L   E     T  Y S R+     +  ++    HKL ++
Sbjct: 632 FLAATYLINRLPSKVIKFDTPL---ERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQFR 688

Query: 307 AKPCAFVGYSIIFKGYRCLDISTG 236
           +K C F+G+S I KG++CLD+STG
Sbjct: 689 SKQCVFLGFSNIHKGFKCLDVSTG 712



 Score = 39.3 bits (90), Expect(2) = 2e-10
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -3

Query: 572 YFSRTYTPQQNGVVERKHSHILETSRTLMAHS 477
           + S  +T QQNG VERKH HI+E   +L+AH+
Sbjct: 590 HVSCPHTHQQNGAVERKHRHIVEVGLSLLAHA 621


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score = 48.9 bits (115), Expect(2) = 6e-10
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = -1

Query: 469 FQASVYLINRQPFTTRLT*CENSQTST*LY-------FSRSLDAHAYYRVKLCTQHKLDY 311
           FQ + +LINR P        +N+     L+       F R      Y  ++    HKL Y
Sbjct: 622 FQTATFLINRMPSKV----LQNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQY 677

Query: 310 KAKPCAFVGYSIIFKGYRCLDISTGS*VWYVHI--QRRKFSFTNKIS 176
           ++  C F+GYS+  KGY CLD  TG      H+     +F F   IS
Sbjct: 678 RSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNIS 724



 Score = 40.0 bits (92), Expect(2) = 6e-10
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -3

Query: 581 LLIYFSRTYTPQQNGVVERKHSHILETSRTLMAHS 477
           +L  FS  Y   QNG VERKH H++ET   L+AH+
Sbjct: 577 ILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHA 611


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 53.1 bits (126), Expect(2) = 1e-09
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = -1

Query: 469 FQASVYLINRQPFTTRL--T*CENSQTST*LYFS-RSLDAHAYYRVKLCTQHKLDYKAKP 299
           F A+VYLINR P  T    T       +T  Y S R      +  ++   QHKL +++  
Sbjct: 645 FLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQFRSTR 704

Query: 298 CAFVGYSIIFKGYRCLDISTG 236
           C F+GYS + KG++CLDISTG
Sbjct: 705 CVFLGYSNMHKGFKCLDISTG 725



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 557 YTPQQNGVVERKHSHILETSRTLMAHS 477
           +T QQNG  ERKH HI+E    L+A S
Sbjct: 608 HTHQQNGAAERKHRHIVEVGLALLAQS 634


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score = 47.8 bits (112), Expect(2) = 1e-09
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
 Frame = -1

Query: 469 FQASVYLINRQPFTTRLT*CENSQTST*LY-------FSRSLDAHAYYRVKLCTQHKLDY 311
           FQ + +LINR P         N+     L+       F R      Y  ++    HKL Y
Sbjct: 672 FQTATFLINRMPSKV----LXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQY 727

Query: 310 KAKPCAFVGYSIIFKGYRCLDISTGS*VWYVHI--QRRKFSFTNKIS 176
           ++  C F+GYS+  KGY CLD  TG      H+     +F F   IS
Sbjct: 728 RSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQNIS 774



 Score = 40.0 bits (92), Expect(2) = 1e-09
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -3

Query: 581 LLIYFSRTYTPQQNGVVERKHSHILETSRTLMAHS 477
           +L  FS  Y   QNG VERKH H++ET   L+AH+
Sbjct: 627 ILHRFSCPYNSSQNGRVERKHRHVVETGLALLAHA 661