BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030618
         (227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-c...    88   6e-16
ref|XP_002520932.1| pentatricopeptide repeat-containing protein,...    87   1e-15
ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|XP_002886104.1| pentatricopeptide repeat-containing protein ...    77   1e-12
ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12

>sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
          Length = 736

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 38/75 (50%), Positives = 54/75 (72%)
 Frame = -3

Query: 225 DPTLFPHVFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVF 46
           DP +FP VFK+CA L  L +G    A ++K+G + + S+GNSI +FYMKCGD+ S L  F
Sbjct: 46  DPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREF 105

Query: 45  ACMVNKDSVSWNIVI 1
            CM ++DSVSWN+++
Sbjct: 106 DCMNSRDSVSWNVIV 120


>ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539898|gb|EEF41477.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 757

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = -3

Query: 225 DPTLFPHVFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVF 46
           D TLFP V K+C+ L  + +G   HAC+IK     +TSIGNSI+NFY+KCG++++A+SVF
Sbjct: 64  DVTLFPPVLKACSYLSYI-DGKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVF 122

Query: 45  ACMVNKDSVSWNIVI 1
             M ++DSVSWN++I
Sbjct: 123 DSMRSRDSVSWNVLI 137


>ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 38/75 (50%), Positives = 54/75 (72%)
 Frame = -3

Query: 225 DPTLFPHVFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVF 46
           DPTL   + K+C++L  ++ G S HA ++KQG    TS GNS+++FYMK G ++SAL VF
Sbjct: 49  DPTLVHSILKACSSLP-VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVF 107

Query: 45  ACMVNKDSVSWNIVI 1
             M ++DSVSWNI+I
Sbjct: 108 DSMRSRDSVSWNIMI 122



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/68 (44%), Positives = 39/68 (57%)
 Frame = -3

Query: 204 VFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVFACMVNKD 25
           V K+CAN   +  G S H  VI +GL     +GNSII+ Y KC D  SA   F  M  ++
Sbjct: 257 VLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRN 316

Query: 24  SVSWNIVI 1
           +VSWN +I
Sbjct: 317 TVSWNSII 324


>ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331944|gb|EFH62363.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 723

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 37/75 (49%), Positives = 48/75 (64%)
 Frame = -3

Query: 225 DPTLFPHVFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVF 46
           DP +FP VFK+CA L  L            QG + Y S+GNSI +FYMKCGD+ S L  F
Sbjct: 44  DPFVFPIVFKACAKLSWLL-----------QGFESYVSVGNSIADFYMKCGDLCSGLRAF 92

Query: 45  ACMVNKDSVSWNIVI 1
            CM ++DSVSWN+++
Sbjct: 93  DCMNSRDSVSWNVIV 107


>ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = -3

Query: 225 DPTLFPHVFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVF 46
           D  + P + K+C+N      GT+ H C+IKQG +  TSI NS I+FYMK GD++SA   F
Sbjct: 47  DTWVLPSILKACSNTS-FNLGTAMHGCLIKQGCQSSTSIANSTIDFYMKYGDLDSAQRAF 105

Query: 45  ACMVNKDSVSWNIVI 1
               NKDSVSWN+++
Sbjct: 106 DSTKNKDSVSWNVMV 120



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/68 (38%), Positives = 42/68 (61%)
 Frame = -3

Query: 204 VFKSCANLHCLKEGTSFHACVIKQGLKPYTSIGNSIINFYMKCGDINSALSVFACMVNKD 25
           V K+C NL  +  GT  H  VI +GL+    +GNS+I+ Y KC +++SA   F  +  K+
Sbjct: 256 VLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKN 315

Query: 24  SVSWNIVI 1
            +SWN+++
Sbjct: 316 IISWNLML 323