BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030607
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-19
emb|CBI17585.3| unnamed protein product [Vitis vinifera]               95   5e-18
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...    94   9e-18
ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi...    92   6e-17
ref|XP_003611888.1| Pentatricopeptide repeat-containing protein ...    92   6e-17

>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  100 bits (248), Expect = 2e-19
 Identities = 47/70 (67%), Positives = 53/70 (75%)
 Frame = +3

Query: 48  NVGKGDSCRVDGDDVRLKPWLDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRRF 227
           N    D   VDG  V+LKPWLDP ALANAL++WDP +VLALE A F+WTTRLVCK+LR F
Sbjct: 324 NNHSSDDAGVDG--VQLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKILRNF 381

Query: 228 KKAETAWKFF 257
              ETAWKFF
Sbjct: 382 NSPETAWKFF 391


>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = +3

Query: 96  LKPWLDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFF 257
           LKPWLDP ALANAL++WDP +VLALE A F+WTTRLVCK+LR F   ETAWKFF
Sbjct: 314 LKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKILRNFNSPETAWKFF 367


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 46/70 (65%), Positives = 49/70 (70%)
 Frame = +3

Query: 48  NVGKGDSCRVDGDDVRLKPWLDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRRF 227
           NV  GD    D  +VRLKPWLDP ALANALS W P  V  LE+A FVWTTRLVCK+LR F
Sbjct: 327 NVNNGD-VHTDTSEVRLKPWLDPKALANALSQWSPEVVSMLEDAKFVWTTRLVCKVLRNF 385

Query: 228 KKAETAWKFF 257
              ETAW FF
Sbjct: 386 SSPETAWYFF 395


>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 43/71 (60%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
 Frame = +3

Query: 48  NVGKGDSCR-VDGDDVRLKPWLDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRR 224
           N+     C  VDG  + LKPW+DP AL +AL +W P +V ALE+ANFVWTTRLVCKMLR 
Sbjct: 337 NISDAGQCNHVDG--IHLKPWMDPRALVSALRNWSPDEVAALESANFVWTTRLVCKMLRN 394

Query: 225 FKKAETAWKFF 257
           FK  E AW FF
Sbjct: 395 FKTPEAAWSFF 405


>ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513223|gb|AES94846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 659

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 84  DDVRLKPWLDPGALANALSDWDPTDVLALENANFVWTTRLVCKMLRRFKKAETAWKFF 257
           D +RLKPWLDP +LA+AL +W P +V ALE ANFVWTTRLVCK+LR F+  +TAW FF
Sbjct: 345 DGIRLKPWLDPRSLASALQNWSPDEVSALEGANFVWTTRLVCKILRSFRSPDTAWNFF 402