BLASTX nr result
ID: Coptis24_contig00030592
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00030592 (323 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002510695.1| pentatricopeptide repeat-containing protein,... 130 1e-28 ref|XP_002307761.1| predicted protein [Populus trichocarpa] gi|2... 129 3e-28 emb|CBI40732.3| unnamed protein product [Vitis vinifera] 127 7e-28 emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera] 127 7e-28 ref|XP_002865400.1| pentatricopeptide repeat-containing protein ... 122 2e-26 >ref|XP_002510695.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551396|gb|EEF52882.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 195 Score = 130 bits (326), Expect = 1e-28 Identities = 60/97 (61%), Positives = 74/97 (76%) Frame = +3 Query: 33 FLKGSESS*CTRXXXXXXRERIVPSTGTVTSFLEPLCRFGPPYAATVIYKKARKVGCELS 212 F+KG + + IVP+TG +TSF+EPLC FGPP+AA +IYKKARK GC++S Sbjct: 19 FIKGRKVADALEMLDEMLGRGIVPTTGDITSFIEPLCSFGPPHAAMMIYKKARKAGCKIS 78 Query: 213 LKAYKLLLMRLSRFGKCGMILTVWDDMQSCGYSSDME 323 L AYKLLLMRLSRFGKCGM+L +WD+MQ GY+SDME Sbjct: 79 LTAYKLLLMRLSRFGKCGMLLNIWDEMQENGYTSDME 115 >ref|XP_002307761.1| predicted protein [Populus trichocarpa] gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa] Length = 563 Score = 129 bits (323), Expect = 3e-28 Identities = 59/76 (77%), Positives = 67/76 (88%) Frame = +3 Query: 96 IVPSTGTVTSFLEPLCRFGPPYAATVIYKKARKVGCELSLKAYKLLLMRLSRFGKCGMIL 275 +V TGTVTSF+EPLC FGPP+AA VIY KARKVGC++SL AYKLLLMRLSRFGKCGM+L Sbjct: 408 MVTKTGTVTSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMML 467 Query: 276 TVWDDMQSCGYSSDME 323 +WD+MQ GYSSDME Sbjct: 468 KIWDEMQESGYSSDME 483 >emb|CBI40732.3| unnamed protein product [Vitis vinifera] Length = 520 Score = 127 bits (320), Expect = 7e-28 Identities = 55/76 (72%), Positives = 68/76 (89%) Frame = +3 Query: 96 IVPSTGTVTSFLEPLCRFGPPYAATVIYKKARKVGCELSLKAYKLLLMRLSRFGKCGMIL 275 ++P+TG +TSF+EPLC++GPP+AA +IYKKARKVGC +SL AYKLLLMRLSRFGKCGM+L Sbjct: 365 MIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLL 424 Query: 276 TVWDDMQSCGYSSDME 323 +WD+MQ GYSSD E Sbjct: 425 NLWDEMQESGYSSDTE 440 >emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera] Length = 561 Score = 127 bits (320), Expect = 7e-28 Identities = 55/76 (72%), Positives = 68/76 (89%) Frame = +3 Query: 96 IVPSTGTVTSFLEPLCRFGPPYAATVIYKKARKVGCELSLKAYKLLLMRLSRFGKCGMIL 275 ++P+TG +TSF+EPLC++GPP+AA +IYKKARKVGC +SL AYKLLLMRLSRFGKCGM+L Sbjct: 406 MIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLL 465 Query: 276 TVWDDMQSCGYSSDME 323 +WD+MQ GYSSD E Sbjct: 466 NLWDEMQESGYSSDTE 481 >ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 675 Score = 122 bits (307), Expect = 2e-26 Identities = 57/96 (59%), Positives = 70/96 (72%) Frame = +3 Query: 36 LKGSESS*CTRXXXXXXRERIVPSTGTVTSFLEPLCRFGPPYAATVIYKKARKVGCELSL 215 +KG + S I+P+TG VTSFL+PLC +GPP+AA VIY+K+RK GC +S Sbjct: 366 IKGRKVSDALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISE 425 Query: 216 KAYKLLLMRLSRFGKCGMILTVWDDMQSCGYSSDME 323 AYKLLL RLSRFGKCGM+L VWD+MQ CGY SD+E Sbjct: 426 SAYKLLLKRLSRFGKCGMLLNVWDEMQECGYPSDVE 461