BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030579
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19758.1| putative Ty3-gypsy-like retroelement pol polyprot...    58   9e-07

>gb|AAD19758.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 587

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/97 (29%), Positives = 52/97 (53%)
 Frame = +1

Query: 49  CYKCGDTTHTSAQCHQQQVIRYVERDTELNCEQVDDFSNEHIDQDTSYEINEVHGDPILA 228
           C++C    H S+ C  ++ + ++E + EL  E+ D+++     ++ S E+       I  
Sbjct: 156 CFRCQGQDHRSSVCPSRRTVAFLEEEEEL--EEEDEYAEVEFAEEESNEM-------INL 206

Query: 229 ICRPLLLAQPSPSQTHNIFGSKCFIKDNVCNLIVDSG 339
           + + +LL+     Q  N+F ++C I D VCNLIVD G
Sbjct: 207 VLQRILLSSKEEGQRRNLFRTRCSINDKVCNLIVDIG 243