BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030543
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containi...    91   1e-16
ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containi...    89   4e-16
ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|2...    83   2e-14
ref|XP_002527661.1| pentatricopeptide repeat-containing protein,...    77   2e-12
ref|XP_003612846.1| Pentatricopeptide repeat-containing protein ...    76   2e-12

>ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 41/80 (51%), Positives = 59/80 (73%)
 Frame = -1

Query: 240 LELSNGVERSLAVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGN 61
           L+    VERS  VFDVL+ V+AS+ MLENA+DVF   K +GL+P + +CNF+LKCLV+ N
Sbjct: 237 LDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEAN 296

Query: 60  KAEYITSVFDVMKNSGPQPD 1
           + E++  VF+ +K+ GP P+
Sbjct: 297 RVEFVRRVFEELKDRGPSPN 316


>ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
           gi|297742067|emb|CBI33854.3| unnamed protein product
           [Vitis vinifera]
          Length = 767

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 41/80 (51%), Positives = 59/80 (73%)
 Frame = -1

Query: 240 LELSNGVERSLAVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGN 61
           LE      RS+ VFD+L+KV+A++ MLENAVDVF+Q K  GL+    SCNF+LKCL + N
Sbjct: 169 LESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEAN 228

Query: 60  KAEYITSVFDVMKNSGPQPD 1
           + E++ S+F+ MK++GP P+
Sbjct: 229 RREFLRSLFEEMKSTGPPPN 248


>ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|222833858|gb|EEE72335.1|
           predicted protein [Populus trichocarpa]
          Length = 697

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 39/74 (52%), Positives = 55/74 (74%)
 Frame = -1

Query: 222 VERSLAVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGNKAEYIT 43
           V RS  V  +L+KV+AS+ ML +A DVF+Q K IG++  + SCNF+LKCL +G+K E + 
Sbjct: 111 VGRSATVLSLLIKVFASNKMLADAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVR 170

Query: 42  SVFDVMKNSGPQPD 1
           S+FD +KNSGP P+
Sbjct: 171 SLFDDLKNSGPSPN 184


>ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532966|gb|EEF34732.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 766

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 34/71 (47%), Positives = 52/71 (73%)
 Frame = -1

Query: 213 SLAVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGNKAEYITSVF 34
           S+ V +VL+KV+A + ML +A DVFVQ +  GL+  +LSCNF+L C  + N+ E+I S+F
Sbjct: 177 SIIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLF 236

Query: 33  DVMKNSGPQPD 1
           + +K+SGP P+
Sbjct: 237 EELKDSGPSPN 247


>ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355514181|gb|AES95804.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/74 (47%), Positives = 56/74 (75%)
 Frame = -1

Query: 222 VERSLAVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGNKAEYIT 43
           VE+S  VFD+L+KV+AS+ MLE+A  VFV+ K  G++  ++SCNF+LKCLV+ N+ + + 
Sbjct: 132 VEKSNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVR 191

Query: 42  SVFDVMKNSGPQPD 1
            +F+V+   GP+P+
Sbjct: 192 LLFEVLIKFGPRPN 205