BLASTX nr result
ID: Coptis24_contig00030498
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030498
(308 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chlorop... 198 4e-49
ref|YP_538936.1| photosystem I assembly protein Ycf3 [Gossypium ... 198 4e-49
ref|YP_636300.1| photosystem I assembly protein Ycf3 [Eucalyptus... 198 4e-49
ref|YP_086967.1| photosystem I assembly protein Ycf3 [Panax gins... 198 4e-49
gb|AFU96552.1| Ycf3, partial (chloroplast) [Viola pubescens] 198 4e-49
>ref|YP_007353916.1| photosystem I assembly protein Ycf3 (chloroplast) [Tectona grandis]
gi|438687605|emb|CCP47131.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688289|emb|CCP47220.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
gi|438688413|emb|CCP47309.1| photosystem I assembly
protein Ycf3 (chloroplast) [Tectona grandis]
Length = 169
Score = 198 bits (503), Expect = 4e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Frame = -3
Query: 306 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 127
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 44 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 103
Query: 126 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFE 22
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWF+
Sbjct: 104 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFD 138
>ref|YP_538936.1| photosystem I assembly protein Ycf3 [Gossypium hirsutum]
gi|119368500|ref|YP_913188.1| PSI accumulation protein
[Gossypium barbadense] gi|325210931|ref|YP_004286005.1|
hypothetical chloroplast RF34 [Gossypium thurberi]
gi|372290933|ref|YP_005087694.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium raimondii]
gi|372291032|ref|YP_005087790.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium darwinii]
gi|372291386|ref|YP_005088281.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium tomentosum]
gi|372291484|ref|YP_005088377.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium herbaceum subsp.
africanum] gi|372291774|ref|YP_005088917.1| photosystem
I assembly protein Ycf3 (chloroplast) [Gossypium
mustelinum] gi|372291858|ref|YP_005089000.1| photosystem
I assembly protein Ycf3 (chloroplast) [Gossypium
arboreum] gi|386800838|ref|YP_006303492.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
gossypioides] gi|394830627|ref|YP_006503278.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium incanum] gi|394830714|ref|YP_006503361.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium somalense] gi|394830889|ref|YP_006503527.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium areysianum] gi|394830976|ref|YP_006503610.1|
photosystem I assembly protein Ycf3 (chloroplast)
[Gossypium robinsonii]
gi|122226162|sp|Q2L906.1|YCF3_GOSHI RecName:
Full=Photosystem I assembly protein ycf3
gi|125991253|sp|A0ZZ36.1|YCF3_GOSBA RecName:
Full=Photosystem I assembly protein ycf3
gi|85687417|gb|ABC73629.1| photosystem I assembly
protein ycf3 [Gossypium hirsutum]
gi|119224862|dbj|BAF41248.1| PSI accumulation protein
[Gossypium barbadense] gi|290775793|gb|ADD62289.1|
hypothetical chloroplast RF34 [Gossypium thurberi]
gi|318084317|gb|ADV38793.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium arboreum]
gi|318084400|gb|ADV38875.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium darwinii]
gi|318084485|gb|ADV38959.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium herbaceum subsp.
africanum] gi|318084569|gb|ADV39042.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
mustelinum] gi|318084651|gb|ADV39123.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
raimondii] gi|318084737|gb|ADV39208.1| photosystem I
assembly protein Ycf3 (chloroplast) [Gossypium
tomentosum] gi|326457128|gb|ADZ74391.1| hypothetical
chloroplast RF34 [Gossypium bickii]
gi|326457216|gb|ADZ74478.1| hypothetical chloroplast
RF34 [Gossypium herbaceum] gi|326457302|gb|ADZ74563.1|
hypothetical chloroplast RF34 [Gossypium longicalyx]
gi|326457389|gb|ADZ74649.1| hypothetical chloroplast
RF34 [Gossypium stocksii] gi|326457477|gb|ADZ74736.1|
hypothetical chloroplast RF34 [Gossypium sturtianum]
gi|329317072|gb|AEB90431.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium gossypioides]
gi|329317156|gb|AEB90514.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium hirsutum]
gi|329317240|gb|AEB90597.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium hirsutum]
gi|329317324|gb|AEB90680.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|329317408|gb|AEB90763.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|329317492|gb|AEB90846.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium barbadense]
gi|335354332|gb|AEH42952.1| photosystem I assembly
protein Ycf3 [Gossypium incanum]
gi|335354416|gb|AEH43035.1| photosystem I assembly
protein Ycf3 [Gossypium somalense]
gi|335354584|gb|AEH43201.1| photosystem I assembly
protein Ycf3 (chloroplast) [Gossypium areysianum]
gi|335354668|gb|AEH43284.1| photosystem I assembly
protein Ycf3 [Gossypium robinsonii]
Length = 168
Score = 198 bits (503), Expect = 4e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Frame = -3
Query: 306 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 127
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102
Query: 126 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFE 22
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWF+
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFD 137
>ref|YP_636300.1| photosystem I assembly protein Ycf3 [Eucalyptus globulus subsp.
globulus] gi|164597810|ref|NP_084670.3| photosystem I
assembly protein Ycf3 [Oenothera elata subsp. hookeri]
gi|169142700|ref|YP_001687127.1| photosystem I assembly
protein Ycf3 [Oenothera argillicola]
gi|169142850|ref|YP_001687273.1| photosystem I assembly
protein Ycf3 [Oenothera glazioviana]
gi|169142935|ref|YP_001687357.1| photosystem I assembly
protein Ycf3 [Oenothera biennis]
gi|169143021|ref|YP_001687441.1| photosystem I assembly
protein Ycf3 [Oenothera parviflora]
gi|309322450|ref|YP_003933963.1| hypothetical
chloroplast RF34 [Eucalyptus grandis]
gi|313199703|ref|YP_004021317.1| hypothetical
chloroplast RF34 [Theobroma cacao]
gi|122239624|sp|Q49KZ7.1|YCF3_EUCGG RecName:
Full=Photosystem I assembly protein ycf3
gi|172045804|sp|Q9MTP0.3|YCF3_OENEH RecName:
Full=Photosystem I assembly protein ycf3
gi|60460810|gb|AAX21030.1| ycf3 protein [Eucalyptus
globulus subsp. globulus] gi|159792938|gb|ABW98694.1|
photosystem I assembly protein Ycf3 [Oenothera
argillicola] gi|159793108|gb|ABW98862.1| photosystem I
assembly protein Ycf3 [Oenothera biennis]
gi|159895462|gb|ABX10027.1| photosystem I assembly
protein Ycf3 [Oenothera glazioviana]
gi|159895547|gb|ABX10111.1| photosystem I assembly
protein Ycf3 [Oenothera parviflora]
gi|162423677|emb|CAB67135.2| photosystem I assembly
protein Ycf3 [Oenothera elata subsp. hookeri]
gi|290488970|gb|ADD30869.1| putative RF3 protein
[Euonymus americanus] gi|308223284|gb|ADO23592.1|
hypothetical chloroplast RF34 [Eucalyptus grandis]
gi|309321267|gb|ADO64810.1| hypothetical chloroplast
RF34 [Theobroma cacao] gi|328924784|gb|ADO64891.2|
hypothetical chloroplast R34 [Theobroma cacao]
gi|371925937|gb|AEX57727.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926019|gb|AEX57808.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926101|gb|AEX57889.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926183|gb|AEX57970.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926265|gb|AEX58051.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926347|gb|AEX58132.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926429|gb|AEX58213.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926511|gb|AEX58294.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926593|gb|AEX58375.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
gi|371926675|gb|AEX58456.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma grandiflorum]
gi|371926757|gb|AEX58537.1| hypothetical chloroplast
RF34 (chloroplast) [Theobroma cacao]
Length = 168
Score = 198 bits (503), Expect = 4e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Frame = -3
Query: 306 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 127
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102
Query: 126 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFE 22
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWF+
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFD 137
>ref|YP_086967.1| photosystem I assembly protein Ycf3 [Panax ginseng]
gi|359422145|ref|YP_004935553.1| photosystem I assembly
protein Ycf3 (chloroplast) [Eleutherococcus senticosus]
gi|68053100|sp|Q68S05.1|YCF3_PANGI RecName:
Full=Photosystem I assembly protein ycf3
gi|51235314|gb|AAT98510.1| ycf3 protein [Panax ginseng]
gi|347448208|gb|AEO92620.1| photosystem I assembly
protein Ycf3 (chloroplast) [Eleutherococcus senticosus]
Length = 168
Score = 198 bits (503), Expect = 4e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Frame = -3
Query: 306 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 127
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102
Query: 126 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFE 22
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWF+
Sbjct: 103 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFD 137
>gb|AFU96552.1| Ycf3, partial (chloroplast) [Viola pubescens]
Length = 169
Score = 198 bits (503), Expect = 4e-49
Identities = 94/95 (98%), Positives = 95/95 (100%)
Frame = -3
Query: 306 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 127
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 44 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 103
Query: 126 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFE 22
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWF+
Sbjct: 104 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFD 138