BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030497
         (342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containi...   101   7e-20
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...    75   4e-12
emb|CBI36131.3| unnamed protein product [Vitis vinifera]               75   4e-12
emb|CBI24272.3| unnamed protein product [Vitis vinifera]               74   1e-11
ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11

>ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  101 bits (251), Expect = 7e-20
 Identities = 58/113 (51%), Positives = 71/113 (62%)
 Frame = -2

Query: 341 NKLKLPTSLSVAKKVHALLEVGGFFSFNPTSIKTSIDIVLGSQLVNVYVSFDCLHEALLV 162
           ++LK P +L  A+ +HALL V GFF   PT   +S      SQLVNVYV+F  L  A L 
Sbjct: 35  HRLKSPPNLHEARTLHALLLVLGFFQ--PTCPHSSS---FASQLVNVYVNFGSLQHAFLT 89

Query: 161 FNRLNEKNNFSWNAILRGYVNKGMLSEAIEFYHFMVKEGAKPDNFTYPLVLKA 3
           F  L  K   +WNAILRG V  G  ++AI FYH M++ G  PDN+TYPLVLKA
Sbjct: 90  FRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKA 142


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/106 (36%), Positives = 59/106 (55%)
 Frame = -2

Query: 320 SLSVAKKVHALLEVGGFFSFNPTSIKTSIDIVLGSQLVNVYVSFDCLHEALLVFNRLNEK 141
           ++   K++HA + + GF            D V+ ++LVN+Y   D L  A L+F+R+ + 
Sbjct: 90  AIKPGKQLHAQVCLAGF----------GFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 140 NNFSWNAILRGYVNKGMLSEAIEFYHFMVKEGAKPDNFTYPLVLKA 3
           N F WN ++RGY   G    A++ Y+ M   G  PDNFT+P VLKA
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKA 185


>emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 39/106 (36%), Positives = 59/106 (55%)
 Frame = -2

Query: 320 SLSVAKKVHALLEVGGFFSFNPTSIKTSIDIVLGSQLVNVYVSFDCLHEALLVFNRLNEK 141
           ++   K++HA + + GF            D V+ ++LVN+Y   D L  A L+F+R+ + 
Sbjct: 90  AIKPGKQLHAQVCLAGF----------GFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 140 NNFSWNAILRGYVNKGMLSEAIEFYHFMVKEGAKPDNFTYPLVLKA 3
           N F WN ++RGY   G    A++ Y+ M   G  PDNFT+P VLKA
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKA 185


>emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
 Frame = -2

Query: 314 SVAKKVHALLEVGGFFSFNPTSIKTSIDIV--LGSQLVNVYVSFDCLHEALLVFNRLNEK 141
           S+ +K   L  +   F  +   +   +D+   LGS+L+ VY    C+ +A  +F++++E+
Sbjct: 15  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 74

Query: 140 NNFSWNAILRGYVNKGMLSEAIEFYHFMVKEGAKPDNFTYPLVLKA 3
           N FSW AI+  Y   G   E I+ ++ MV EG +PD+F +P V KA
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120


>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
 Frame = -2

Query: 314 SVAKKVHALLEVGGFFSFNPTSIKTSIDIV--LGSQLVNVYVSFDCLHEALLVFNRLNEK 141
           S+ +K   L  +   F  +   +   +D+   LGS+L+ VY    C+ +A  +F++++E+
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 140 NNFSWNAILRGYVNKGMLSEAIEFYHFMVKEGAKPDNFTYPLVLKA 3
           N FSW AI+  Y   G   E I+ ++ MV EG +PD+F +P V KA
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 199