BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030491
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_002511318.1| pentatricopeptide repeat-containing protein,...    69   3e-10
ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [S...    68   7e-10
ref|XP_002299552.1| predicted protein [Populus trichocarpa] gi|2...    68   7e-10
ref|NP_174474.1| pentatricopeptide repeat-containing protein [Ar...    68   9e-10

>ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449524140|ref|XP_004169081.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 38/105 (36%), Positives = 61/105 (58%)
 Frame = +2

Query: 5   HMISPTFSTKQPLISSLNKKKEPYEVIKSYKEMVITHNGEKENISKLVFAPVLKACSKAY 184
           H+  P  S    +I  L  K+ P   +  +K+M   H    ++  K  F+ VLKACS+  
Sbjct: 80  HIDKPESSAYNVMIRGLAFKRSPDNALLLFKKM---HEKSVQH-DKFTFSSVLKACSRMK 135

Query: 185 ARRPGEQIHAQSIKFGISSDIFIQTSLIAMYSSCGQLELSLNVFE 319
           A R GEQ+HA  +K G  S+ F++ +LI MY++CGQ+ ++ +VF+
Sbjct: 136 ALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD 180


>ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550433|gb|EEF51920.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 33/106 (31%), Positives = 61/106 (57%)
 Frame = +2

Query: 2   EHMISPTFSTKQPLISSLNKKKEPYEVIKSYKEMVITHNGEKENISKLVFAPVLKACSKA 181
           +++  P  S    +I +   K+ P + +  +K+M+     E     +  F   LKACS+ 
Sbjct: 84  DNIDGPDSSAYNIMIRAFTLKRSPQKALAFFKQML----EEAVAFDEFTFPCTLKACSRL 139

Query: 182 YARRPGEQIHAQSIKFGISSDIFIQTSLIAMYSSCGQLELSLNVFE 319
             R+ G+QIHAQ +K+G  S+  +  +LI MY++CG++E++ N+F+
Sbjct: 140 RGRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFD 185


>ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
           gi|241930650|gb|EES03795.1| hypothetical protein
           SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 39/107 (36%), Positives = 59/107 (55%)
 Frame = +2

Query: 2   EHMISPTFSTKQPLISSLNKKKEPYEVIKSYKEMVITHNGEKENISKLVFAPVLKACSKA 181
           E + SPT      L+  L +   P + I  YK+      G K +   + F  VLKAC+K 
Sbjct: 368 EQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKA--QEKGMKPD--NMTFPFVLKACAKT 423

Query: 182 YARRPGEQIHAQSIKFGISSDIFIQTSLIAMYSSCGQLELSLNVFEK 322
           YA + GEQ+H+  IK G   DIF+  SLI +Y++CG L  + ++F++
Sbjct: 424 YAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDE 470


>ref|XP_002299552.1| predicted protein [Populus trichocarpa] gi|222846810|gb|EEE84357.1|
           predicted protein [Populus trichocarpa]
          Length = 505

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/94 (37%), Positives = 54/94 (57%)
 Frame = +2

Query: 41  LISSLNKKKEPYEVIKSYKEMVITHNGEKENISKLVFAPVLKACSKAYARRPGEQIHAQS 220
           +I    ++++P   +  +  M+   N  +   +KL F  VLKACS+  A   G+Q+H   
Sbjct: 96  MIRGYAQREKPENALSLFYSMLCNANSGQ---NKLTFPFVLKACSQVRAIEEGKQVHGLV 152

Query: 221 IKFGISSDIFIQTSLIAMYSSCGQLELSLNVFEK 322
            K G+S D+F+Q SLI+MYSSCG +  +  VF K
Sbjct: 153 FKHGLSEDLFVQNSLISMYSSCGLIGFACQVFNK 186


>ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g31920 gi|12321292|gb|AAG50713.1|AC079041_6
           PPR-repeat protein, putative [Arabidopsis thaliana]
           gi|332193295|gb|AEE31416.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 36/82 (43%), Positives = 52/82 (63%)
 Frame = +2

Query: 77  EVIKSYKEMVITHNGEKENISKLVFAPVLKACSKAYARRPGEQIHAQSIKFGISSDIFIQ 256
           E +  Y EM+   N E +N +   +  +LKAC++  + R G+QIH Q  K G+ +D+F+Q
Sbjct: 115 EALCFYNEMMQRGN-EPDNFT---YPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQ 170

Query: 257 TSLIAMYSSCGQLELSLNVFEK 322
            SLI MY  CG++ELS  VFEK
Sbjct: 171 NSLINMYGRCGEMELSSAVFEK 192