BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030439
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
ref|XP_002522615.1| pentatricopeptide repeat-containing protein,...    70   2e-10
ref|NP_568214.1| pentatricopeptide repeat-containing protein [Ar...    68   7e-10
gb|AFK33523.1| unknown [Lotus japonicus]                               68   7e-10

>ref|XP_003531533.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 395

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/86 (44%), Positives = 59/86 (68%)
 Frame = -3

Query: 260 RINSHPALKLNQTRFLSNTFSSIPLESDDDLEKSKQDDLKTKIFKLRFSKRSVMTLLEKW 81
           R NS  A  LN+TRF+S+   ++  +  ++  +   DDL+++IF+LR  KRS   +L+KW
Sbjct: 11  RRNSGLACLLNRTRFVSS--GAVSSDLVEESVEGVDDDLRSRIFRLRLPKRSATNVLQKW 68

Query: 80  VADGNNVTLFELRNIARDLNKSQRYK 3
           V  GN VTL +LR+I+++L +SQRYK
Sbjct: 69  VLQGNPVTLSQLRDISKELRRSQRYK 94


>ref|XP_003545705.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
           mitochondrial-like [Glycine max]
          Length = 399

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
 Frame = -3

Query: 308 MTMRSLSSLLKRPLIERINSHPALKLNQTRFLSNTFSSIPLESDDDLEKSKQ--DDLKTK 135
           M  RSL   L+R    R NS  A  LN+TRF+S+        S D +E+S +  DDL+++
Sbjct: 1   MAHRSLFLSLRRFSSCR-NSGLACVLNRTRFVSSG-----AVSSDLVEESVEGDDDLRSR 54

Query: 134 IFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYK 3
           IF+LR  KRS   +L+KWV  GN +TL +LR+I+++L +SQRYK
Sbjct: 55  IFRLRLPKRSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYK 98


>ref|XP_002522615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538091|gb|EEF39702.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 426

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
 Frame = -3

Query: 302 MRSLSSLLKRPLIERINSHPALKLNQTRFLSNTFSSI-----PLESDDDLEKSKQDDLKT 138
           M S S L     I RINS      N  ++  N F S       + +++   K  +DDLK+
Sbjct: 19  MASRSFLFNLQRICRINSGIGSLSNSKKWEFNHFLSSGTLRNEVLAEESSSKEIEDDLKS 78

Query: 137 KIFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYK 3
           +IF+LR  KRS   ++  WV++GN VT  ELRNI+ +L K QRYK
Sbjct: 79  RIFRLRLPKRSATNIIHNWVSEGNTVTASELRNISNELRKLQRYK 123


>ref|NP_568214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75165070|sp|Q94B59.1|PP372_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g09450, mitochondrial; Flags: Precursor
           gi|14596093|gb|AAK68774.1| putative protein [Arabidopsis
           thaliana] gi|27311913|gb|AAO00922.1| putative protein
           [Arabidopsis thaliana] gi|332004012|gb|AED91395.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 409

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 28/55 (50%), Positives = 44/55 (80%)
 Frame = -3

Query: 167 EKSKQDDLKTKIFKLRFSKRSVMTLLEKWVADGNNVTLFELRNIARDLNKSQRYK 3
           E  ++DDLK++IF+LR  KRS  T+LEKW+ +GN +T+ ELR I+++L +++RYK
Sbjct: 50  ESEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYK 104


>gb|AFK33523.1| unknown [Lotus japonicus]
          Length = 358

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 35/77 (45%), Positives = 50/77 (64%)
 Frame = -3

Query: 233 LNQTRFLSNTFSSIPLESDDDLEKSKQDDLKTKIFKLRFSKRSVMTLLEKWVADGNNVTL 54
           LN+ RF+S+   S      DD       DL+++I +LR  KRS   +L KWV +GN+VT+
Sbjct: 30  LNRARFVSSGAVSTDFVESDD-------DLRSRILRLRLPKRSATNILHKWVLEGNSVTV 82

Query: 53  FELRNIARDLNKSQRYK 3
            ELR+IA++L +SQRYK
Sbjct: 83  SELRDIAKELRRSQRYK 99