BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030421
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAS15054.1| DNA-directed DNA polymerase [Daucus carota]             72   4e-11
ref|NP_064103.1| orf135 gene product (mitochondrion) [Beta vulga...    71   8e-11
gb|AFD29780.1| DNA polymerase (mitochondrion) [Silene vulgaris]        69   3e-10
ref|NP_862323.1| hypothetical protein BrnaMpl_p1 [Brassica napus...    67   2e-09
ref|NP_064072.1| orf192 gene product (mitochondrion) [Beta vulga...    65   6e-09

>gb|AAS15054.1| DNA-directed DNA polymerase [Daucus carota]
          Length = 774

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 34/65 (52%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   RIHMYKYISRSDCYYTNTDSAILGSALPEDEISSNVLGKLKLECEEWVQVLTETGLYCHR 182
           RIHMY YI+R DCYYT+TDS +LG+ L +D +SS+VLGKLKLE +    +      YC+ 
Sbjct: 494 RIHMYPYIAREDCYYTDTDSIVLGNPLSDDMVSSSVLGKLKLEDQIAWGLFLAPKTYCYT 553

Query: 183 CLHGK 197
            + GK
Sbjct: 554 TIDGK 558


>ref|NP_064103.1| orf135 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435127|ref|YP_004222345.1| hypothetical protein
           BevumaM_p111 [Beta vulgaris subsp. maritima]
           gi|346683218|ref|YP_004842150.1| hypothetical protein
           BemaM_p106 [Beta macrocarpa] gi|9087353|dbj|BAA99497.1|
           orf135 [Beta vulgaris subsp. vulgaris]
           gi|54606688|dbj|BAD66711.1| orf135 [Beta vulgaris subsp.
           vulgaris] gi|317905681|emb|CBJ14075.1| hypothetical
           protein [Beta vulgaris subsp. maritima]
           gi|319439860|emb|CBJ17565.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|320148052|emb|CBJ20715.1|
           hypothetical protein [Beta vulgaris subsp. maritima]
           gi|345500136|emb|CBX24955.1| hypothetical protein [Beta
           macrocarpa] gi|384939117|emb|CBL51963.1| hypothetical
           protein (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 135

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = +3

Query: 3   RIHMYKYISRSDCYYTNTDSAILGSALPEDEISSNVLGKLKLE 131
           RIHMYKYISR DCYYT+TDS +L + LPED++SS+ LGK KLE
Sbjct: 29  RIHMYKYISRDDCYYTDTDSIVLSNPLPEDDVSSSELGKFKLE 71


>gb|AFD29780.1| DNA polymerase (mitochondrion) [Silene vulgaris]
          Length = 1018

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/43 (69%), Positives = 36/43 (83%)
 Frame = +3

Query: 3   RIHMYKYISRSDCYYTNTDSAILGSALPEDEISSNVLGKLKLE 131
           RIHMYKYI+R DCYYT+TDS +LGS L +DE+S   LGK+KLE
Sbjct: 776 RIHMYKYINRDDCYYTDTDSVVLGSPLSDDEVSPTELGKMKLE 818


>ref|NP_862323.1| hypothetical protein BrnaMpl_p1 [Brassica napus]
           gi|23200580|dbj|BAC16364.1| orf5 [Brassica napus]
          Length = 990

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 30/43 (69%), Positives = 37/43 (86%)
 Frame = +3

Query: 3   RIHMYKYISRSDCYYTNTDSAILGSALPEDEISSNVLGKLKLE 131
           RI+MYKYISRSDCYYT+TDS +L  +LP++ ISS+ LGK KLE
Sbjct: 770 RIYMYKYISRSDCYYTDTDSVVLQDSLPDEMISSSELGKFKLE 812


>ref|NP_064072.1| orf192 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
           gi|323435092|ref|YP_004222310.1| hypothetical protein
           BevumaM_p075 [Beta vulgaris subsp. maritima]
           gi|346683184|ref|YP_004842116.1| hypothetical protein
           BemaM_p071 [Beta macrocarpa] gi|9087321|dbj|BAA99465.1|
           orf192 [Beta vulgaris subsp. vulgaris]
           gi|319439825|emb|CBJ17537.1| hypothetical protein [Beta
           vulgaris subsp. maritima] gi|345500102|emb|CBX24920.1|
           hypothetical protein [Beta macrocarpa]
           gi|384939153|emb|CBL52000.1| hypothetical protein
           (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 192

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = +3

Query: 6   IHMYKYISRSDCYYTNTDSAILGSALPEDEISSNVLGKLKLE 131
           I+MY YISR DCYYT+TDS +LG  LPE+ +SS+++GK KLE
Sbjct: 52  IYMYPYISRDDCYYTDTDSVVLGKPLPEEVVSSSIIGKFKLE 93