BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030412
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32639.3| unnamed protein product [Vitis vinifera]              167   6e-40
ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containi...   167   6e-40
ref|XP_003594404.1| Pentatricopeptide repeat-containing protein ...   167   1e-39
ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containi...   165   3e-39
ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|2...   160   8e-38

>emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  167 bits (424), Expect = 6e-40
 Identities = 83/141 (58%), Positives = 104/141 (73%), Gaps = 3/141 (2%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G+++H  ++R GF    ++    +DMYAKCGK + AR LFDR+  K VVSWTS+I AYG+
Sbjct: 217 GKQIHCVAMRFGFTFDTQLCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGN 276

Query: 196 QGCG-EAYELFKVMESSGVS--PNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPD 366
            G G EA +LFK ME  G S  PN VTFLAVLSAC HSG+VEQG+ECF  ++K Y +DP 
Sbjct: 277 HGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPG 336

Query: 367 SEHYACFIDLLGRAGLVDEVW 429
            EHYACFID+LGRAG ++EVW
Sbjct: 337 PEHYACFIDILGRAGQIEEVW 357



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G  VH  +++ G ++     TA +DMY+K G+  ++  +F+ +  K VV+W +++ ++  
Sbjct: 20  GNAVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVR 79

Query: 196 QG-CGEAYELFKVMESSGVSPNSVTFLAVLSACGHSGLVEQGRE 324
            G   EA  +F+ M+  GV  +  T  ++L AC      +QG++
Sbjct: 80  HGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQ 123


>ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  167 bits (424), Expect = 6e-40
 Identities = 83/141 (58%), Positives = 104/141 (73%), Gaps = 3/141 (2%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G+++H  ++R GF    ++    +DMYAKCGK + AR LFDR+  K VVSWTS+I AYG+
Sbjct: 256 GKQIHCVAMRFGFTFDTQLCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGN 315

Query: 196 QGCG-EAYELFKVMESSGVS--PNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPD 366
            G G EA +LFK ME  G S  PN VTFLAVLSAC HSG+VEQG+ECF  ++K Y +DP 
Sbjct: 316 HGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPG 375

Query: 367 SEHYACFIDLLGRAGLVDEVW 429
            EHYACFID+LGRAG ++EVW
Sbjct: 376 PEHYACFIDILGRAGQIEEVW 396



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G++VH  +++ G ++     TA +DMY+K G+  ++  +F+ +  K VV+W +++ ++  
Sbjct: 59  GKQVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVR 118

Query: 196 QG-CGEAYELFKVMESSGVSPNSVTFLAVLSACGHSGLVEQGRE 324
            G   EA  +F+ M+  GV  +  T  ++L AC      +QG++
Sbjct: 119 HGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKAFQQGKQ 162


>ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355483452|gb|AES64655.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 516

 Score =  167 bits (422), Expect = 1e-39
 Identities = 83/141 (58%), Positives = 106/141 (75%), Gaps = 3/141 (2%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G++VH  ++R GF  + ++    +DMYAKCGK + A  +FD I  K V+SWT +I  YG 
Sbjct: 274 GKQVHCVAVRQGFTFETQLCNVLLDMYAKCGKILQAWSVFDGIFQKDVISWTCMIDGYGR 333

Query: 196 QGCG-EAYELF-KVMES-SGVSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPD 366
            GCG EA ELF K+ME  S V PNSVTFL+VLSACGHSGLVE+G++CF  M++ YGIDP+
Sbjct: 334 NGCGYEAVELFWKMMEDGSEVLPNSVTFLSVLSACGHSGLVEEGKQCFNIMKEKYGIDPE 393

Query: 367 SEHYACFIDLLGRAGLVDEVW 429
            EHYACFID+LGRAG ++EVW
Sbjct: 394 PEHYACFIDILGRAGKIEEVW 414


>ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
           gi|449529896|ref|XP_004171934.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Cucumis sativus]
          Length = 544

 Score =  165 bits (418), Expect = 3e-39
 Identities = 81/141 (57%), Positives = 104/141 (73%), Gaps = 3/141 (2%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G+++H  S+RHG  S  ++    +DMYAKCGK + AR +FD + HK VVSW+S+I  YGS
Sbjct: 308 GKQIHCVSVRHGLTSNTQLCNILLDMYAKCGKVLNARAVFDGMCHKNVVSWSSMIQTYGS 367

Query: 196 QGCG-EAYELFKVMES--SGVSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPD 366
            G G +A+ELFK+M    +GV PNSVTFL+VLSACGHSGLV+QG+ECF   ++ Y     
Sbjct: 368 HGDGLKAFELFKIMVEGRTGVLPNSVTFLSVLSACGHSGLVQQGQECFYLAKEKYSSCLG 427

Query: 367 SEHYACFIDLLGRAGLVDEVW 429
            EHYACFID+LGRAG +DEVW
Sbjct: 428 PEHYACFIDVLGRAGKIDEVW 448



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
 Frame = +1

Query: 1   AALPR---GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWT 171
           +ALP    G+ VHG  ++ G  S     TA +DMY+KCG    +  +F+ +  + VV+W 
Sbjct: 103 SALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWN 162

Query: 172 SIIGAYGSQGCG-EAYELFKVMESSGVSPNSVTFLAVLSAC 291
           S++ ++  +G   EA  +F+ M+   V  +  T  +VL AC
Sbjct: 163 SLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKAC 203


>ref|XP_002310252.1| predicted protein [Populus trichocarpa] gi|222853155|gb|EEE90702.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score =  160 bits (406), Expect = 8e-38
 Identities = 80/141 (56%), Positives = 103/141 (73%), Gaps = 3/141 (2%)
 Frame = +1

Query: 16  GREVHGFSLRHGFESQDKVNTAFVDMYAKCGKGVTARLLFDRIRHKTVVSWTSIIGAYGS 195
           G ++H  +LR GF +  +V    +DMYAKCG+ + +R +FD I HKTVVSWTS+I AYG 
Sbjct: 308 GMQIHCVALRFGFIANTQVCNVLLDMYAKCGRILKSRSIFDGICHKTVVSWTSMIDAYGR 367

Query: 196 QGCG-EAYELFKVM--ESSGVSPNSVTFLAVLSACGHSGLVEQGRECFISMRKNYGIDPD 366
            G G EA +LFK M  E S V PNS+T LAVLSACGHSGLV++G+E F S R+ YG+DP 
Sbjct: 368 HGHGDEALKLFKEMGQEGSRVLPNSLTLLAVLSACGHSGLVKEGQELFNSAREKYGLDPS 427

Query: 367 SEHYACFIDLLGRAGLVDEVW 429
            EHY+C ID+LGRAG +++ W
Sbjct: 428 QEHYSCVIDILGRAGQIEDAW 448