BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030393
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   208   4e-52
ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containi...   208   4e-52
ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containi...   207   5e-52
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...   206   2e-51
emb|CBI20738.3| unnamed protein product [Vitis vinifera]              206   2e-51

>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  208 bits (529), Expect = 4e-52
 Identities = 98/142 (69%), Positives = 120/142 (84%)
 Frame = +1

Query: 7    GVIPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEPEIEHYSCLVDVLGRAGLLED 186
            G+ PDK++FIG+LSACS+SGL SEAY +FD+M+K YGI PEIEHYSCLVD LGRAG +++
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 187  AEKLISNMPFAPSASMYRALLGACRVQKNAEVGKRIASQLLALDPLDPSAYVLMSNIYAA 366
            AE +I++MPF  SASMYRALLGACR + +AE  KR+A +LLALDP D SAYVL+SNIYAA
Sbjct: 1356 AENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAA 1415

Query: 367  ANQWNQVADARKMMKTRNVKKD 432
            + QW+ V DAR MMK +NVKKD
Sbjct: 1416 SRQWDDVTDARNMMKLKNVKKD 1437


>ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  208 bits (529), Expect = 4e-52
 Identities = 98/142 (69%), Positives = 120/142 (84%)
 Frame = +1

Query: 7    GVIPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEPEIEHYSCLVDVLGRAGLLED 186
            G+ PDK++FIG+LSACS+SGL SEAY +FD+M+K YGI PEIEHYSCLVD LGRAG +++
Sbjct: 1296 GIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQE 1355

Query: 187  AEKLISNMPFAPSASMYRALLGACRVQKNAEVGKRIASQLLALDPLDPSAYVLMSNIYAA 366
            AE +I++MPF  SASMYRALLGACR + +AE  KR+A +LLALDP D SAYVL+SNIYAA
Sbjct: 1356 AENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAA 1415

Query: 367  ANQWNQVADARKMMKTRNVKKD 432
            + QW+ V DAR MMK +NVKKD
Sbjct: 1416 SRQWDDVTDARNMMKLKNVKKD 1437


>ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  207 bits (528), Expect = 5e-52
 Identities = 100/143 (69%), Positives = 121/143 (84%)
 Frame = +1

Query: 4    QGVIPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEPEIEHYSCLVDVLGRAGLLE 183
            +GV+PD+++FIG+LSACS+SGLVSEAY +F SM K+YGIEPEIEHYSCLVD L RAG +E
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 184  DAEKLISNMPFAPSASMYRALLGACRVQKNAEVGKRIASQLLALDPLDPSAYVLMSNIYA 363
            +AEK+IS+MPF  SASMYR LL ACRVQ + E GKR+A +LLAL+P D +AYVL+SN+YA
Sbjct: 1394 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1453

Query: 364  AANQWNQVADARKMMKTRNVKKD 432
            AANQW  VA AR MM+  NVKKD
Sbjct: 1454 AANQWENVASARNMMRKVNVKKD 1476


>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  206 bits (523), Expect = 2e-51
 Identities = 97/142 (68%), Positives = 120/142 (84%)
 Frame = +1

Query: 7    GVIPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEPEIEHYSCLVDVLGRAGLLED 186
            G+ PD++SFIGILSACS++GL SEAY +  SM  DYGIEPEIEHYSCLVD LGRAGL+++
Sbjct: 1304 GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQE 1363

Query: 187  AEKLISNMPFAPSASMYRALLGACRVQKNAEVGKRIASQLLALDPLDPSAYVLMSNIYAA 366
            A+K+I  MPF  SAS+ RALLGACR+Q + E GKR+A++L AL+P D +AYVL+SNIYAA
Sbjct: 1364 ADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAA 1423

Query: 367  ANQWNQVADARKMMKTRNVKKD 432
            AN+W+ V DARKMMK +NVKKD
Sbjct: 1424 ANRWDDVTDARKMMKRKNVKKD 1445


>emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  206 bits (523), Expect = 2e-51
 Identities = 97/142 (68%), Positives = 120/142 (84%)
 Frame = +1

Query: 7    GVIPDKISFIGILSACSYSGLVSEAYGHFDSMYKDYGIEPEIEHYSCLVDVLGRAGLLED 186
            G+ PD++SFIGILSACS++GL SEAY +  SM  DYGIEPEIEHYSCLVD LGRAGL+++
Sbjct: 589  GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQE 648

Query: 187  AEKLISNMPFAPSASMYRALLGACRVQKNAEVGKRIASQLLALDPLDPSAYVLMSNIYAA 366
            A+K+I  MPF  SAS+ RALLGACR+Q + E GKR+A++L AL+P D +AYVL+SNIYAA
Sbjct: 649  ADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAA 708

Query: 367  ANQWNQVADARKMMKTRNVKKD 432
            AN+W+ V DARKMMK +NVKKD
Sbjct: 709  ANRWDDVTDARKMMKRKNVKKD 730