BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030310
         (692 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...   226   3e-57
ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...   226   3e-57
ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2...   217   2e-54
ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...   207   2e-51
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...   205   6e-51

>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score =  226 bits (577), Expect = 3e-57
 Identities = 120/231 (51%), Positives = 163/231 (70%), Gaps = 2/231 (0%)
 Frame = +1

Query: 1   IQSKSYTQIPNIL-TXXXXXXXXXXXXXXXYTQPLKTQIIDQILQSLIPIRPRSLPHLTY 177
           +++K+Y +IP +L +               + Q ++ QI+D++LQSLIPIRPRS   LTY
Sbjct: 42  VEAKNYIKIPELLISSDACQISNPFSFFSSFPQNIRVQIVDEMLQSLIPIRPRSKAQLTY 101

Query: 178 SYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWI-TYRKHDSVPGILSAM 354
           SYLLS+TL++  PFPL  A+LQRTLRSG  PV QTH+ LSS W+  +    SV  IL  M
Sbjct: 102 SYLLSYTLQSSHPFPLALAVLQRTLRSGCVPVPQTHVLLSSAWLDQHCLSHSVANILLQM 161

Query: 355 RAIGYKPDLNTCNYLVQSLCAVDQFDQSVRVLKCMGQVGCEPNSESYGLVIGSLCGAKKT 534
           ++IGY PD  TCNYL+ SLCAVDQ +++V+VL+ MG  GC P+S SYG VIG++C  +KT
Sbjct: 162 QSIGYHPDCGTCNYLLSSLCAVDQLEEAVKVLRGMGGAGCIPDSSSYGAVIGAMCRVRKT 221

Query: 535 NDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLEKVG 687
             A++L+K+MV V+  +   QGT+VKL+AA++AN EI KAVEM+E LEK G
Sbjct: 222 AKALDLMKQMV-VQYGLTPGQGTLVKLLAALRANREIWKAVEMIEFLEKEG 271


>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score =  226 bits (576), Expect = 3e-57
 Identities = 120/229 (52%), Positives = 160/229 (69%), Gaps = 3/229 (1%)
 Frame = +1

Query: 1   IQSKSYTQIPNILTXXXXXXXXXXXXXXX--YTQPLKTQIIDQILQSLIPIRPRSLPHLT 174
           ++SK+Y +IP++L                  ++Q L+TQ++D+ILQS IP+RPRS P + 
Sbjct: 42  VESKTYQKIPDLLISLEETCLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIA 101

Query: 175 YSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKHD-SVPGILSA 351
           Y+ LLS TL++ +P PL  AILQRTLRSG  PV QTHL LSS W++ R+   SV  ILS 
Sbjct: 102 YACLLSFTLQSANPLPLALAILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSE 161

Query: 352 MRAIGYKPDLNTCNYLVQSLCAVDQFDQSVRVLKCMGQVGCEPNSESYGLVIGSLCGAKK 531
           M++IGY PD  TCNYL+ SLCA+DQ  ++V VLK MGQVGC P+ E YG VIG++C  ++
Sbjct: 162 MQSIGYYPDCGTCNYLILSLCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRR 221

Query: 532 TNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLE 678
           T DA EL+KEMV  +  +  RQGTV+ L+AA++A  EI KAVEM+E LE
Sbjct: 222 TTDATELMKEMV-AKIGLTPRQGTVLNLVAALRAKKEIWKAVEMIEFLE 269


>ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  217 bits (553), Expect = 2e-54
 Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 3/232 (1%)
 Frame = +1

Query: 1   IQSKSYTQIPNILTXXXXXXXXXXXXXXXYTQP--LKTQIIDQILQSLIPIRPRSLPHLT 174
           ++ KSY++ P++                  T P  L+TQ+ID+I+QSLIPIRPR    + 
Sbjct: 40  VECKSYSKFPDLFDSFKQSNNNPSPFSFLSTFPFNLRTQVIDEIIQSLIPIRPRFRNFIV 99

Query: 175 YSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRKH-DSVPGILSA 351
           YS LLS+TL+N + F L+ AI+Q TLRSG  PV QTH+SLSS W+  R+   SV  IL  
Sbjct: 100 YSSLLSYTLQNSNLFSLSLAIIQCTLRSGCLPVPQTHVSLSSAWLDRRREGQSVGDILME 159

Query: 352 MRAIGYKPDLNTCNYLVQSLCAVDQFDQSVRVLKCMGQVGCEPNSESYGLVIGSLCGAKK 531
           M++IGY PD   CNY+V SLC VDQ  ++V+VLK M QVGC P+ ESYG+VIG++C  +K
Sbjct: 160 MKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKGMKQVGCFPDWESYGIVIGAMCRVRK 219

Query: 532 TNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLEKVG 687
            +DA+E++KEMV V  R+  RQG VVK++AA++AN E++KA EM+E LEK G
Sbjct: 220 CDDAIEMMKEMV-VRMRLCPRQGVVVKVLAALRANREMRKAGEMIEFLEKEG 270


>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score =  207 bits (526), Expect = 2e-51
 Identities = 108/229 (47%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
 Frame = +1

Query: 1   IQSKSYTQIPNILTXXXXXXXXXXXXXXX--YTQPLKTQIIDQILQSLIPIRPRSLPHLT 174
           +++K Y +IP ++                  +    + ++ID+ILQS +P+RPRSLP + 
Sbjct: 42  VETKEYLRIPELVVSLKEPYQNSMLFSFLSAFQHQHRIRVIDEILQSFVPVRPRSLPKIV 101

Query: 175 YSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK-HDSVPGILSA 351
           YS LL++ L++ DP PL+FAILQRTLRSG  P  QT L LS  W+  R+   SV  I++ 
Sbjct: 102 YSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTQLLLSDAWLERRRGSQSVADIINE 161

Query: 352 MRAIGYKPDLNTCNYLVQSLCAVDQFDQSVRVLKCMGQVGCEPNSESYGLVIGSLCGAKK 531
           M+ IGY PD  TCNYLV SLCAVD+ D++++V++ MG  GC P+ ESYG VI SLC A+K
Sbjct: 162 MKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARK 221

Query: 532 TNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLE 678
           TND V++VKEMV  +  +  R+G + K+ AA++AN EI KA+EM+E +E
Sbjct: 222 TNDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVE 269


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score =  205 bits (522), Expect = 6e-51
 Identities = 107/229 (46%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
 Frame = +1

Query: 1   IQSKSYTQIPNILTXXXXXXXXXXXXXXX--YTQPLKTQIIDQILQSLIPIRPRSLPHLT 174
           +++K Y +IP ++                  + +  + ++ID+ILQS +P+RPRSLP + 
Sbjct: 42  VETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEILQSFVPVRPRSLPKIV 101

Query: 175 YSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQTHLSLSSTWITYRK-HDSVPGILSA 351
           YS LL++ L++ DP PL+FAILQRTLRSG  P  QTHL LS  W+  R+   SV  I++ 
Sbjct: 102 YSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAWLERRRGSQSVADIINE 161

Query: 352 MRAIGYKPDLNTCNYLVQSLCAVDQFDQSVRVLKCMGQVGCEPNSESYGLVIGSLCGAKK 531
           M+ IGY PD  TCNYLV SLCAVD+ D++++V++ M   GC P+ ESYG VI SLC A+K
Sbjct: 162 MKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPDVESYGAVINSLCLARK 221

Query: 532 TNDAVELVKEMVRVENRVVLRQGTVVKLMAAMKANGEIKKAVEMVELLE 678
           T D V++VKEMV  +  +  R+G + K+ AA++AN EI KA+EM+E +E
Sbjct: 222 TTDVVKIVKEMVS-KAGISPRKGMLTKVAAALRANREIWKAIEMIEFVE 269