BLASTX nr result
ID: Coptis24_contig00030300
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00030300 (338 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 119 2e-25 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 103 1e-20 gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 102 3e-20 gb|EEE54811.1| hypothetical protein OsJ_02230 [Oryza sativa Japo... 95 5e-18 gb|EEC70889.1| hypothetical protein OsI_02427 [Oryza sativa Indi... 95 5e-18 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 119 bits (299), Expect = 2e-25 Identities = 58/111 (52%), Positives = 79/111 (71%) Frame = +2 Query: 2 LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181 +DIS+AFDT++W FL V +Q GF+E + WI A+ QS +SI ING QG FS +G++ Sbjct: 261 VDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVR 320 Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334 QGDPLSPLLF AED LSRS+++LV + K++ M PSH+++ADDI Sbjct: 321 QGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDI 371 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 103 bits (257), Expect = 1e-20 Identities = 48/111 (43%), Positives = 71/111 (63%) Frame = +2 Query: 2 LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181 +D+++AFDT++WDFL +V + GFNE + WI+ + S+ M I +NG G F+ +G++ Sbjct: 322 IDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVR 381 Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334 QGDPLSPLLF E+ LSRSIS L + I + + C P H + DD+ Sbjct: 382 QGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDL 432 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 102 bits (254), Expect = 3e-20 Identities = 45/111 (40%), Positives = 75/111 (67%) Frame = +2 Query: 2 LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181 +DI++AFDT+DW+FL V ++ GF+E+++ WI + QS +S+++NG G F+ G++ Sbjct: 587 VDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVR 646 Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334 QGDPLSPLLF E+ LSR++S + ++ M P+H+++ADD+ Sbjct: 647 QGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDV 697 >gb|EEE54811.1| hypothetical protein OsJ_02230 [Oryza sativa Japonica Group] Length = 1209 Score = 95.1 bits (235), Expect = 5e-18 Identities = 46/110 (41%), Positives = 69/110 (62%) Frame = +2 Query: 2 LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181 LD+S+A+D +DW+FL VR +VGF E W++WI S+ +NG L FS +GL+ Sbjct: 536 LDLSKAYDRVDWEFLRCVRIKVGFCETWVRWIMTCVTMVKYSVSLNGNLLEPFSPTRGLR 595 Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADD 331 QGDPLSP LF F + LS ++ V+ +++ + + + SHL+FADD Sbjct: 596 QGDPLSPYLFLFVAEGLSTILNHEVVAGRLEELKVCRRAPGVSHLLFADD 645 >gb|EEC70889.1| hypothetical protein OsI_02427 [Oryza sativa Indica Group] Length = 1477 Score = 95.1 bits (235), Expect = 5e-18 Identities = 46/110 (41%), Positives = 69/110 (62%) Frame = +2 Query: 2 LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181 LD+S+A+D +DW+FL VR +VGF E W++WI S+ +NG L FS +GL+ Sbjct: 804 LDLSKAYDRVDWEFLRCVRIKVGFCETWVRWIMTCVTMVKYSVSLNGNLLEPFSPTRGLR 863 Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADD 331 QGDPLSP LF F + LS ++ V+ +++ + + + SHL+FADD Sbjct: 864 QGDPLSPYLFLFVAEGLSTILNHEVVAGRLEELKVCRRAPGVSHLLFADD 913