BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030300
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   119   2e-25
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   103   1e-20
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   102   3e-20
gb|EEE54811.1| hypothetical protein OsJ_02230 [Oryza sativa Japo...    95   5e-18
gb|EEC70889.1| hypothetical protein OsI_02427 [Oryza sativa Indi...    95   5e-18

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/111 (52%), Positives = 79/111 (71%)
 Frame = +2

Query: 2   LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181
           +DIS+AFDT++W FL  V +Q GF+E +  WI A+ QS  +SI ING  QG FS  +G++
Sbjct: 261 VDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVR 320

Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334
           QGDPLSPLLF  AED LSRS+++LV + K++ M        PSH+++ADDI
Sbjct: 321 QGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDI 371


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  103 bits (257), Expect = 1e-20
 Identities = 48/111 (43%), Positives = 71/111 (63%)
 Frame = +2

Query: 2   LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181
           +D+++AFDT++WDFL +V +  GFNE +  WI+ +  S+ M I +NG   G F+  +G++
Sbjct: 322 IDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVR 381

Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334
           QGDPLSPLLF   E+ LSRSIS L  +  I  +  +   C P H  + DD+
Sbjct: 382 QGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDL 432


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  102 bits (254), Expect = 3e-20
 Identities = 45/111 (40%), Positives = 75/111 (67%)
 Frame = +2

Query: 2   LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181
           +DI++AFDT+DW+FL  V ++ GF+E+++ WI  + QS  +S+++NG   G F+   G++
Sbjct: 587 VDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVR 646

Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADDI 334
           QGDPLSPLLF   E+ LSR++S    + ++  M        P+H+++ADD+
Sbjct: 647 QGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDV 697


>gb|EEE54811.1| hypothetical protein OsJ_02230 [Oryza sativa Japonica Group]
          Length = 1209

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 46/110 (41%), Positives = 69/110 (62%)
 Frame = +2

Query: 2   LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181
           LD+S+A+D +DW+FL  VR +VGF E W++WI         S+ +NG L   FS  +GL+
Sbjct: 536 LDLSKAYDRVDWEFLRCVRIKVGFCETWVRWIMTCVTMVKYSVSLNGNLLEPFSPTRGLR 595

Query: 182 QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADD 331
           QGDPLSP LF F  + LS  ++  V+  +++ + +  +    SHL+FADD
Sbjct: 596 QGDPLSPYLFLFVAEGLSTILNHEVVAGRLEELKVCRRAPGVSHLLFADD 645


>gb|EEC70889.1| hypothetical protein OsI_02427 [Oryza sativa Indica Group]
          Length = 1477

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 46/110 (41%), Positives = 69/110 (62%)
 Frame = +2

Query: 2    LDISQAFDTMDWDFLWVVRRQVGFNERWIQWIQALFQSNTMSIMINGGLQGNFSAGKGLK 181
            LD+S+A+D +DW+FL  VR +VGF E W++WI         S+ +NG L   FS  +GL+
Sbjct: 804  LDLSKAYDRVDWEFLRCVRIKVGFCETWVRWIMTCVTMVKYSVSLNGNLLEPFSPTRGLR 863

Query: 182  QGDPLSPLLFAFAEDCLSRSISRLVLEKKIQHMVINSK*CSPSHLMFADD 331
            QGDPLSP LF F  + LS  ++  V+  +++ + +  +    SHL+FADD
Sbjct: 864  QGDPLSPYLFLFVAEGLSTILNHEVVAGRLEELKVCRRAPGVSHLLFADD 913