BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030276
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16980.3| unnamed protein product [Vitis vinifera]               82   4e-14
ref|XP_002265242.1| PREDICTED: uncharacterized protein LOC100258...    82   4e-14
ref|XP_002323183.1| f-box family protein [Populus trichocarpa] g...    78   6e-13
emb|CAN78181.1| hypothetical protein VITISV_013634 [Vitis vinifera]    75   5e-12
ref|XP_002264264.2| PREDICTED: F-box/LRR-repeat protein At3g4888...    73   3e-11

>emb|CBI16980.3| unnamed protein product [Vitis vinifera]
          Length = 623

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
 Frame = +1

Query: 1   PKIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQG 180
           P ++YL L   S+ +E L+ IL GC+ L+  DVR C GFDEDD EILKLASHI  F  +G
Sbjct: 533 PNLRYLVLNGASIEQESLVMILQGCKQLIEIDVRDCDGFDEDDAEILKLASHIPSFMCKG 592

Query: 181 SMLY---DDYYETGADY 222
           S LY   DDY  T  D+
Sbjct: 593 SYLYDPFDDYEHTQIDH 609



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/61 (52%), Positives = 44/61 (72%)
 Frame = +1

Query: 1   PKIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQG 180
           P ++YL L+  ++ ++ ++ IL GC+ LV  DVRGC GFDEDD EIL+LASHI  F  +G
Sbjct: 114 PNLRYLVLKGATIRQKRVVMILQGCKQLVHLDVRGCTGFDEDDAEILELASHIPSFMCEG 173

Query: 181 S 183
           S
Sbjct: 174 S 174


>ref|XP_002265242.1| PREDICTED: uncharacterized protein LOC100258440 [Vitis vinifera]
          Length = 446

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
 Frame = +1

Query: 1   PKIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQG 180
           P ++YL L   S+ +E L+ IL GC+ L+  DVR C GFDEDD EILKLASHI  F  +G
Sbjct: 356 PNLRYLVLNGASIEQESLVMILQGCKQLIEIDVRDCDGFDEDDAEILKLASHIPSFMCKG 415

Query: 181 SMLY---DDYYETGADY 222
           S LY   DDY  T  D+
Sbjct: 416 SYLYDPFDDYEHTQIDH 432


>ref|XP_002323183.1| f-box family protein [Populus trichocarpa]
           gi|222867813|gb|EEF04944.1| f-box family protein
           [Populus trichocarpa]
          Length = 314

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
 Frame = +1

Query: 1   PKIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQG 180
           P IKYL LR   +  E L+ IL GC++LV  DVR C+GFD DDE++L+LAS+IK F+ +G
Sbjct: 231 PNIKYLILRGAWIDFEDLVIILQGCKNLVHLDVRDCLGFDFDDEKVLELASNIKTFKCEG 290

Query: 181 SMLYDDYYETGA-DYEDFTGNG 243
           SML D  Y+ G  D++D    G
Sbjct: 291 SMLVD--YDDGVIDHDDHVYEG 310


>emb|CAN78181.1| hypothetical protein VITISV_013634 [Vitis vinifera]
          Length = 716

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 16  LSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQGSMLY- 192
           L L   S+ +E L+ IL GC+ L+  DVR C GFDEDD EILKLASHI  F  +GS LY 
Sbjct: 631 LVLNGASIEQESLVMILQGCKQLIEIDVRDCDGFDEDDAEILKLASHIPSFMCKGSYLYD 690

Query: 193 --DDYYETGADY 222
             DDY  T  D+
Sbjct: 691 PFDDYEHTQIDH 702



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = +1

Query: 4   KIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQGS 183
           + K+LSL+  ++  E L+ I+ GC++L   D R C GF  DD  IL+LASHI  F+  GS
Sbjct: 227 RFKHLSLKGSTIEGETLVMIILGCKELASLDARDCTGFKADDAGILQLASHIPAFKCAGS 286

Query: 184 MLYDDY 201
             + +Y
Sbjct: 287 RDFKNY 292


>ref|XP_002264264.2| PREDICTED: F-box/LRR-repeat protein At3g48880-like [Vitis vinifera]
          Length = 275

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +1

Query: 1   PKIKYLSLRNCSLPRECLIQILNGCRDLVLFDVRGCIGFDEDDEEILKLASHIKDFRPQG 180
           P +KYL L+  ++ ++ L+ IL GC++L L DVR CIGF E + EIL+LASHI  F  +G
Sbjct: 195 PNLKYLDLKGSTIEQKNLVMILQGCKELQLLDVRDCIGFWEGNAEILELASHIPKFMCEG 254

Query: 181 SML--YDDYYETGADYEDFTG 237
           S+   YD Y +   D + ++G
Sbjct: 255 SIYEEYDTYIDGDVDSDYYSG 275