BLASTX nr result
ID: Coptis24_contig00030255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030255
(536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera] 224 6e-57
ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi... 224 8e-57
ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containi... 217 1e-54
emb|CBI26570.3| unnamed protein product [Vitis vinifera] 214 6e-54
ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|2... 211 4e-53
>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 224 bits (571), Expect = 6e-57
Identities = 115/178 (64%), Positives = 139/178 (78%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
YTVLIDSLGKA I EAA+VMS ML+A +KPTLR FSALICGYAKAG RVEAEETF CM+
Sbjct: 469 YTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCML 528
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
RSGIKPDHLAYSVMLDILLR NE+ K+M LY+EM+ FKPD LYE +L VL KEN E+
Sbjct: 529 RSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 588
Query: 176 VFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKMLRLHVSHDFELERESLFAIMNS 3
V KDM+++CG++ Q + SIL++ C + AA MLRL +S EL+RE+L +I+ S
Sbjct: 589 DVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGS 646
Score = 58.5 bits (140), Expect = 6e-07
Identities = 38/163 (23%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITE--AADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSC 363
+ LI++ K+G + A ++++ + +GI+P + ++ LI ++ EA + ++
Sbjct: 292 FNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYND 351
Query: 362 MVRSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENN 183
MV +PD Y+ M+ + R ++++ L++++ +GF PD Y +L A+E N
Sbjct: 352 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 411
Query: 182 EDVFENVRKDMKDVCGISLQSLTSILI-----RKGCHEFAAKM 69
D + + +DM + G +T I ++G H+ A ++
Sbjct: 412 VDKVKEICEDMVKM-GFGKDEMTYNTIIHMYGKRGQHDLAFQL 453
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/131 (25%), Positives = 64/131 (48%)
Frame = -1
Query: 533 TVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMVR 354
T+++D+ AG I E + GM AG PT+ ++ +I AK + E S M
Sbjct: 888 TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 947
Query: 353 SGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNEDV 174
+ KPD ++ +L + + KK+ +Y+ + G KPD+ Y ++L+ ++ +
Sbjct: 948 AXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEE 1007
Query: 173 FENVRKDMKDV 141
++ +M+ V
Sbjct: 1008 GLSLMHEMRRV 1018
Score = 55.8 bits (133), Expect = 4e-06
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
Y ++I L K ++ + ++S M A KP L I+++++ Y G + + + +
Sbjct: 922 YRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQ 981
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAK----E 189
+G+KPD Y+ ++ + R ++ ++L EM R G +P Y+ ++ K E
Sbjct: 982 EAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1041
Query: 188 NNEDVFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKML 66
E++FE + + + + G H A K+L
Sbjct: 1042 QAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLL 1082
>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 224 bits (570), Expect = 8e-57
Identities = 115/178 (64%), Positives = 139/178 (78%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
YTVLIDSLGKA I EAA+VMS ML+A +KPTLR FSALICGYAKAG RVEAEETF CM+
Sbjct: 437 YTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCML 496
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
RSGIKPDHLAYSVMLDILLR NE+ K+M LY+EM+ FKPD LYE +L VL KEN E+
Sbjct: 497 RSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 556
Query: 176 VFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKMLRLHVSHDFELERESLFAIMNS 3
V KDM+++CG++ Q + SIL++ C + AA MLRL +S EL+RE+L +I+ S
Sbjct: 557 DVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGS 614
Score = 58.5 bits (140), Expect = 6e-07
Identities = 38/163 (23%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITE--AADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSC 363
+ LI++ K+G + A ++++ + +GI+P + ++ LI ++ EA + ++
Sbjct: 260 FNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYND 319
Query: 362 MVRSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENN 183
MV +PD Y+ M+ + R ++++ L++++ +GF PD Y +L A+E N
Sbjct: 320 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 379
Query: 182 EDVFENVRKDMKDVCGISLQSLTSILI-----RKGCHEFAAKM 69
D + + +DM + G +T I ++G H+ A ++
Sbjct: 380 VDKVKEICEDMVKM-GFGKDEMTYNTIIHMYGKRGQHDLAFQL 421
Score = 55.8 bits (133), Expect = 4e-06
Identities = 33/131 (25%), Positives = 64/131 (48%)
Frame = -1
Query: 533 TVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMVR 354
T+++D+ AG I E + GM AG PT+ ++ +I AK + E S M
Sbjct: 856 TLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEV 915
Query: 353 SGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNEDV 174
+ KPD ++ +L + + KK+ +Y+ + G KPD+ Y ++L+ ++ +
Sbjct: 916 ARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEE 975
Query: 173 FENVRKDMKDV 141
++ +M+ V
Sbjct: 976 GLSLMHEMRRV 986
Score = 55.5 bits (132), Expect = 5e-06
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
Y ++I L K ++ + ++S M A KP L I+++++ Y G + + + +
Sbjct: 890 YRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQ 949
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAK----E 189
+G+KPD Y+ ++ + R ++ ++L EM R G +P Y+ ++ K E
Sbjct: 950 EAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVE 1009
Query: 188 NNEDVFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKML 66
E++FE + + + + G H A K+L
Sbjct: 1010 QAEELFEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLL 1050
>ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 217 bits (552), Expect = 1e-54
Identities = 106/178 (59%), Positives = 139/178 (78%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
YTVLIDSLGKA K+ EAA+VMS MLDAG+KPTL +SALIC YAKAG R EAEETF+CM
Sbjct: 464 YTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMR 523
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
RSGIKPD LAYSVMLD LR NE KK+M LY EM+R GF PD GLYE ++ L +EN D
Sbjct: 524 RSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWD 583
Query: 176 VFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKMLRLHVSHDFELERESLFAIMNS 3
V + + +DM+++ G++ Q ++S+L++ GC++ AAKML++ +S+ +EL+ E +IM+S
Sbjct: 584 VVDRIIRDMEELSGMNPQVISSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIMSS 641
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/130 (29%), Positives = 61/130 (46%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
Y LI + + + EA V S M +P L ++A+I Y + +AEE F +
Sbjct: 324 YNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELE 383
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
G PD + Y+ +L R T+K + EM++RGF D+ Y I+ + K+ D
Sbjct: 384 SKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHD 443
Query: 176 VFENVRKDMK 147
+ +DMK
Sbjct: 444 QAMQIYRDMK 453
Score = 55.8 bits (133), Expect = 4e-06
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
Y L+ + + G + D+ M+ G ++ +I Y K G +A + + M
Sbjct: 394 YNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMK 453
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAK----E 189
SG PD + Y+V++D L ++++ +++ + EML G KP Y ++ AK E
Sbjct: 454 SSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKRE 513
Query: 188 NNEDVFENVRK 156
E+ F +R+
Sbjct: 514 EAEETFNCMRR 524
Score = 55.5 bits (132), Expect = 5e-06
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITE--AADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSC 363
+ LI++ K+G + A +++ + +GI+P + ++ LI ++ EA FS
Sbjct: 287 FNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSD 346
Query: 362 MVRSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENN 183
M +PD Y+ M+ + R +K+ L++E+ +GF PD Y +L ++E N
Sbjct: 347 MESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGN 406
Query: 182 EDVFENVRKDM 150
+ ++ ++M
Sbjct: 407 TEKVRDICEEM 417
Score = 54.7 bits (130), Expect = 9e-06
Identities = 28/106 (26%), Positives = 55/106 (51%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
Y +++ + +G +A ++++ M ++GI+PT+ L+ Y K+G EAE +
Sbjct: 1057 YHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLR 1116
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLY 219
+G+ D L YS ++D L+ + K + EM G +PD ++
Sbjct: 1117 TTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIW 1162
>emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 214 bits (545), Expect = 6e-54
Identities = 110/169 (65%), Positives = 132/169 (78%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
YTVLIDSLGKA I EAA+VMS ML+A +KPTLR FSALICGYAKAG RVEAEETF CM+
Sbjct: 412 YTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCML 471
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
RSGIKPDHLAYSVMLDILLR NE+ K+M LY+EM+ FKPD LYE +L VL KEN E+
Sbjct: 472 RSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 531
Query: 176 VFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKMLRLHVSHDFELER 30
V KDM+++CG++ Q + SIL++ C + AA MLRL +S EL++
Sbjct: 532 DVHKVVKDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQ 580
Score = 58.5 bits (140), Expect = 6e-07
Identities = 38/163 (23%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITE--AADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSC 363
+ LI++ K+G + A ++++ + +GI+P + ++ LI ++ EA + ++
Sbjct: 235 FNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYND 294
Query: 362 MVRSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENN 183
MV +PD Y+ M+ + R ++++ L++++ +GF PD Y +L A+E N
Sbjct: 295 MVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGN 354
Query: 182 EDVFENVRKDMKDVCGISLQSLTSILI-----RKGCHEFAAKM 69
D + + +DM + G +T I ++G H+ A ++
Sbjct: 355 VDKVKEICEDMVKM-GFGKDEMTYNTIIHMYGKRGQHDLAFQL 396
>ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|222852729|gb|EEE90276.1|
predicted protein [Populus trichocarpa]
Length = 1480
Score = 211 bits (538), Expect = 4e-53
Identities = 106/178 (59%), Positives = 137/178 (76%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMV 357
YTVLIDSLGK KI EAA VMS ML+ G+KPTL+ +SALICGYAKAG VEAEETF CM+
Sbjct: 469 YTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCML 528
Query: 356 RSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNED 177
RSGI+PDHLAYSVMLDI LR NE K++MTLY+EML G D LYE +L L K N +
Sbjct: 529 RSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVE 588
Query: 176 VFENVRKDMKDVCGISLQSLTSILIRKGCHEFAAKMLRLHVSHDFELERESLFAIMNS 3
V +DM+++CG++ Q+++SIL++ C++ AAKMLR +S FE++RE+L +I++S
Sbjct: 589 DIGRVIRDMEEICGMNTQTISSILVKGECYDEAAKMLRRAISDHFEIDRENLLSILSS 646
Score = 55.1 bits (131), Expect = 7e-06
Identities = 39/198 (19%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Frame = -1
Query: 530 VLIDSLGKAGKITEAADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSCMVRS 351
+++D+ +AG I E + GM AG PT+ ++ + ++ + E S M +
Sbjct: 888 LMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEA 947
Query: 350 GIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENNEDVF 171
G KPD ++ +L + + + +K++ +Y+ + G +PD+ Y ++++ +++ +
Sbjct: 948 GFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEG 1007
Query: 170 ENVRKDMKDVCGI---------------------SLQSLTSILIRKGC---HEFAAKMLR 63
++ +M+ V G+ + L L KGC F M++
Sbjct: 1008 FSLMHEMR-VAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMK 1066
Query: 62 LHVSHDFELERESLFAIM 9
++ + + E LF++M
Sbjct: 1067 IYRNSGSHSKAERLFSMM 1084
Score = 54.7 bits (130), Expect = 9e-06
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = -1
Query: 536 YTVLIDSLGKAGKITE--AADVMSGMLDAGIKPTLRIFSALICGYAKAGMRVEAEETFSC 363
+ LI++ KAG + A ++++ + +G++P ++ LI ++A EA + F
Sbjct: 292 FNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDD 351
Query: 362 MVRSGIKPDHLAYSVMLDILLRSNETKKSMTLYREMLRRGFKPDQGLYEHILLVLAKENN 183
M +PD Y+ M+ + R + K+ L+ ++ RGF PD Y +L A+E N
Sbjct: 352 MEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGN 411
Query: 182 EDVFENVRKDM 150
+ + + ++M
Sbjct: 412 VEKVKEIWEEM 422