BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030236
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    68   9e-10
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    65   6e-09
gb|AFR34352.1| hypothetical protein GlmaxMp41 (mitochondrion) [G...    57   2e-06

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
 Frame = +2

Query: 5    VCGEAQESLLHIFVDCPFARTLWFGMDLHSIVYSVSSLSFKEWLENVLRRCSRHQEGQEL 184
            VCGE +E+  HI   CP AR LW  + +    ++   ++   W+   L   +    G E 
Sbjct: 1087 VCGEVEENTDHILRRCPVARILWRKLGMLG-EHNREEINLGSWITKNL--SADTMMGSEW 1143

Query: 185  LQKLAISLWCIWLGRNTARFE---SASINHVSFLFKAKNLFTLSLXXXXXXXXXSAQDKV 355
            L+  A+S W +W  RN   F    S  I+ VSF+F        ++          +  + 
Sbjct: 1144 LRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVSFIFARVKEIKEAMDRNDTNKSQHSGRRK 1203

Query: 356  PIWVGWSLPPVGWYKLNTDGAA 421
             I V W  P  GW KLNTDGA+
Sbjct: 1204 EILVRWQCPKEGWVKLNTDGAS 1225


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/137 (26%), Positives = 56/137 (40%)
 Frame = +2

Query: 8   CGEAQESLLHIFVDCPFARTLWFGMDLHSIVYSVSSLSFKEWLENVLRRCSRHQEGQELL 187
           C    E+++H+  DC  +  +W  +  H+ + +  S   +EW+ N L +           
Sbjct: 508 CAREDETVIHVLRDCVHSTQVWLRLIPHNYITNFFSFDCREWVFNNLNKKGIGDNPATWQ 567

Query: 188 QKLAISLWCIWLGRNTARFESASINHVSFLFKAKNLFTLSLXXXXXXXXXSAQDKVPIWV 367
                + W +W  RN + FE       S        FT  +         S+  K  I++
Sbjct: 568 TTFMTTCWYLWNWRNKSIFE-IGFQRPSNPTLVIQKFTREIEDNTKLVHKSSHQKETIYI 626

Query: 368 GWSLPPVGWYKLNTDGA 418
           GW  PP GW KLN DGA
Sbjct: 627 GWMRPPFGWVKLNCDGA 643


>gb|AFR34352.1| hypothetical protein GlmaxMp41 (mitochondrion) [Glycine max]
          Length = 167

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
 Frame = +2

Query: 23  ESLLHIFVDCPFARTLWFGMDLHSIVYSVSSLSFKEWLENVLRRCSRHQEGQELLQKLAI 202
           ES +H+   CP+A  +W    L      + +L+F +W++  + +C      +E L+ + +
Sbjct: 4   ESTIHVLKGCPWASGIWLLCPLALHTQQMQALNFSDWVKE-MGKCL----DEEQLELMLV 58

Query: 203 SLWCIWLGRNTARFESASINHVSFLFKAKNLFTLSLXXXXXXXXXSAQDKVPIW---VGW 373
             W +W  RN   F+      V  + KA + F               ++K+ I    +GW
Sbjct: 59  VAWALWSDRNLLLFQDIQNYPVDVVNKAISFF-----------EEYKKEKLKIVQTPIGW 107

Query: 374 SLPPVGWYKLNTDGA 418
             PP G YK+NTD A
Sbjct: 108 QAPPHGVYKINTDAA 122