BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030206
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|2...   129   3e-28
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               88   6e-16
gb|ACN32036.1| unknown [Zea mays]                                      67   2e-09
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]    67   2e-09
emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera]    67   2e-09

>ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|222871802|gb|EEF08933.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score =  129 bits (323), Expect = 3e-28
 Identities = 62/85 (72%), Positives = 72/85 (84%)
 Frame = -3

Query: 257 EFKRGATGAVTTEVDPECAVWNQRDQMILSWINSSLTPSVLSTVARYTSSRDTWLSLEKR 78
           EFK    G +TTEVDP  A W+Q+DQMILSWIN+SL+P+VLSTVAR+TSS+ TW SLEKR
Sbjct: 57  EFKSNTDGTITTEVDPRYATWHQQDQMILSWINNSLSPTVLSTVARFTSSQATWSSLEKR 116

Query: 77  YASHSQNRILQLRNDLFTTKGEGLS 3
           YAS S+NRILQLR+DL T KGEGLS
Sbjct: 117 YASQSKNRILQLRHDLLTVKGEGLS 141


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 45/81 (55%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
 Frame = -3

Query: 254 FKRGATGAVTTEVDPECAVWNQRDQMILSWINSSLTPSVLSTVARYTSSRDTWLSLEKRY 75
           F +   G +T +V+P+   W  +DQM+LSWIN SLTP VLSTVAR TS   TW +L  R+
Sbjct: 56  FLKDKAGQLTDQVNPDFEPWILQDQMVLSWINGSLTPKVLSTVARSTSLHATWTALATRF 115

Query: 74  ASHSQNRILQLRNDLF-TTKG 15
           AS SQ+R+LQLR DL  TT+G
Sbjct: 116 ASQSQHRVLQLRADLLRTTRG 136


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = -3

Query: 239 TGAVTTEVDPECAVWNQRDQMILSWINSSLTPSVLSTVARYTSSRDTWLSLEKRYASHSQ 60
           +G  T  ++PE   W  +DQ++LS INSSL+  VL+TV   T++R  W +LE+ YAS S+
Sbjct: 74  SGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSR 133

Query: 59  NRILQLRNDLFT 24
            RI+Q+R  L T
Sbjct: 134 ARIMQIRMQLAT 145


>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 49/72 (68%)
 Frame = -3

Query: 218  VDPECAVWNQRDQMILSWINSSLTPSVLSTVARYTSSRDTWLSLEKRYASHSQNRILQLR 39
            ++P    W ++D+ ILSW+ SSLTP++++ +  + SS   W +LEK ++S S+ RI+QLR
Sbjct: 923  INPAFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSHSAWNALEKTFSSSSRARIMQLR 982

Query: 38   NDLFTTKGEGLS 3
             +L +TK   LS
Sbjct: 983  LELQSTKKGSLS 994


>emb|CAN65942.1| hypothetical protein VITISV_001716 [Vitis vinifera]
          Length = 1319

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/72 (41%), Positives = 49/72 (68%)
 Frame = -3

Query: 218 VDPECAVWNQRDQMILSWINSSLTPSVLSTVARYTSSRDTWLSLEKRYASHSQNRILQLR 39
           ++P    W ++D+ ILSW+ SSLTP++++ +  + SS   W +LEK ++S S+ RI+QLR
Sbjct: 81  INPAFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSHSAWNALEKTFSSSSRARIMQLR 140

Query: 38  NDLFTTKGEGLS 3
            +L +TK   LS
Sbjct: 141 LELQSTKKGSLS 152