BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030175
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526312.1| pentatricopeptide repeat-containing protein,...   100   1e-19
emb|CBI26947.3| unnamed protein product [Vitis vinifera]               99   5e-19
ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containi...    99   5e-19
emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]    98   6e-19
ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16

>ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534393|gb|EEF36101.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 729

 Score =  100 bits (250), Expect = 1e-19
 Identities = 47/93 (50%), Positives = 68/93 (73%)
 Frame = -3

Query: 292 LIEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFC 113
           LI++M ++   +S YTYNPL CGYC      EALAL ++M++RGVS T++++NT + GFC
Sbjct: 294 LIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFC 353

Query: 112 KCRRMIEVREQFGNILGNNLVPDIVSYNCLIYG 14
           K  +M + R+Q  ++L  NL+PDI+SYN LIYG
Sbjct: 354 KEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/81 (37%), Positives = 41/81 (50%)
 Frame = -3

Query: 247 TYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFCKCRRMIEVREQFGNI 68
           TYN L  G C   +   AL L +DM++RG+   + TY   V+G CK   M+  +E F  +
Sbjct: 414 TYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM 473

Query: 67  LGNNLVPDIVSYNCLIYGRNK 5
           L   L PD  +Y   I G  K
Sbjct: 474 LHVGLAPDQFAYTARIVGELK 494



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 47/95 (49%)
 Frame = -3

Query: 289 IEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFCK 110
           +  ML+   +    +YN L  G+C      EA  L D++  R +S  I TYNT +DG C+
Sbjct: 365 LSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCR 424

Query: 109 CRRMIEVREQFGNILGNNLVPDIVSYNCLIYGRNK 5
              +    +   +++   + PD+V+Y  L+ G  K
Sbjct: 425 LGDLETALKLKEDMINRGIHPDVVTYTVLVNGACK 459


>emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/93 (49%), Positives = 66/93 (70%)
 Frame = -3

Query: 292 LIEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFC 113
           LI +ML++   +SAYTYNPL  GY      +EAL+L ++M+ +G S T++TYN+F+ G C
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLC 350

Query: 112 KCRRMIEVREQFGNILGNNLVPDIVSYNCLIYG 14
           K  RM +  +Q  ++L NNL+PD+VSYN LIYG
Sbjct: 351 KLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383


>ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/93 (49%), Positives = 66/93 (70%)
 Frame = -3

Query: 292 LIEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFC 113
           LI +ML++   +SAYTYNPL  GY      +EAL+L ++M+ +G S T++TYN+F+ G C
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLC 350

Query: 112 KCRRMIEVREQFGNILGNNLVPDIVSYNCLIYG 14
           K  RM +  +Q  ++L NNL+PD+VSYN LIYG
Sbjct: 351 KLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383


>emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 46/93 (49%), Positives = 66/93 (70%)
 Frame = -3

Query: 292 LIEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFC 113
           LI +ML++   +SAYTYNPL  GY      +EAL+L ++M+ +G S T++TYN+F+ G C
Sbjct: 597 LIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLC 656

Query: 112 KCRRMIEVREQFGNILGNNLVPDIVSYNCLIYG 14
           K  RM +  +Q  ++L NNL+PD+VSYN LIYG
Sbjct: 657 KLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 689


>ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 43/93 (46%), Positives = 60/93 (64%)
 Frame = -3

Query: 292 LIEKMLESCWVISAYTYNPLTCGYCTNEEFSEALALADDMMSRGVSLTISTYNTFVDGFC 113
           LI++ML     +SAYTY+PL  GYC   +  EA  L ++M+SRG   T+ TYNT + G C
Sbjct: 247 LIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLC 306

Query: 112 KCRRMIEVREQFGNILGNNLVPDIVSYNCLIYG 14
           K  R+ + R+    ++  NL+PD+VSYN LIYG
Sbjct: 307 KWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYG 339