BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030145
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               66   3e-09
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    64   1e-08
ref|XP_003635371.1| PREDICTED: uncharacterized protein LOC100853...    60   2e-07
emb|CAN65855.1| hypothetical protein VITISV_013124 [Vitis vinifera]    58   9e-07
emb|CAN66028.1| hypothetical protein VITISV_020472 [Vitis vinifera]    57   1e-06

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 32/76 (42%), Positives = 44/76 (57%)
 Frame = -2

Query: 230 TFRPQCQICSKFGHVAIDCHNRMNYSYMGKIPPTKLALLANL*DDGXXXXXXXSYAPKES 51
           T R QCQICS+ GH AIDC NR+N SY G++P ++L  +               ++P E 
Sbjct: 299 TGRIQCQICSRPGHSAIDCFNRLNLSYEGRVPSSRLNAMT------------AHHSPSEE 346

Query: 50  MWYDDTGATNHLTSDL 3
            W  DTGA +H+T +L
Sbjct: 347 TWLTDTGANSHVTPNL 362


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/73 (42%), Positives = 39/73 (53%)
 Frame = -2

Query: 224 RPQCQICSKFGHVAIDCHNRMNYSYMGKIPPTKLALLANL*DDGXXXXXXXSYAPKESMW 45
           RP CQIC K GH AIDC +R +YSY G+ PP  LA +              +      +W
Sbjct: 272 RPVCQICGKSGHTAIDCFHRFDYSYQGRFPPQDLAAMV----------AETNATFDHQVW 321

Query: 44  YDDTGATNHLTSD 6
           Y D+GA  H+TSD
Sbjct: 322 YMDSGANAHITSD 334


>ref|XP_003635371.1| PREDICTED: uncharacterized protein LOC100853190 [Vitis vinifera]
          Length = 251

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
 Frame = -2

Query: 230 TFRPQCQICSKFGHVAIDCHNRMNYSYMGKIPPTKL-ALLANL*DDGXXXXXXXSYAPKE 54
           T +  CQIC K  H A+DC + MNY+Y G+ PPT+L A++AN            +   +E
Sbjct: 145 TPKSPCQICGKLSHKALDCFHIMNYAYQGRHPPTQLAAMVAN-----------SNAEQEE 193

Query: 53  SMWYDDTGATNHLTSDL 3
             W+ D+GA  H+T++L
Sbjct: 194 ETWFADSGANQHITANL 210


>emb|CAN65855.1| hypothetical protein VITISV_013124 [Vitis vinifera]
          Length = 456

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 28/73 (38%), Positives = 40/73 (54%)
 Frame = -2

Query: 224 RPQCQICSKFGHVAIDCHNRMNYSYMGKIPPTKLALLANL*DDGXXXXXXXSYAPKESMW 45
           R  CQIC +  H A+DC+NRMNY++ G+ PP +L  +              +Y   +  W
Sbjct: 285 RSPCQICKRENHQALDCYNRMNYAFQGRHPPIELVAMV--------VEANTTYL-NQHQW 335

Query: 44  YDDTGATNHLTSD 6
           Y D+GA  H+TSD
Sbjct: 336 YVDSGANIHVTSD 348


>emb|CAN66028.1| hypothetical protein VITISV_020472 [Vitis vinifera]
          Length = 823

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 27/74 (36%), Positives = 37/74 (50%)
 Frame = -2

Query: 227 FRPQCQICSKFGHVAIDCHNRMNYSYMGKIPPTKLALLANL*DDGXXXXXXXSYAPKESM 48
           + P  QIC KFGH AIDC +  +YSY G+ PP  L  +              +      +
Sbjct: 224 YHPVXQICGKFGHTAIDCFHHFDYSYQGRFPPQDLIAMV----------AETNATFDHQV 273

Query: 47  WYDDTGATNHLTSD 6
           WY D+GA  H+TS+
Sbjct: 274 WYMDSGANTHITSN 287