BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030123
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    94   1e-17
gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t...    94   1e-17
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    93   3e-17
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    91   7e-17
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    91   1e-16

>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 43/94 (45%), Positives = 57/94 (60%)
 Frame = -2

Query: 384 RQGDPISPFLFTICTKYVSRYTANLQSNKKIHGIKFLKHAPPITHLMFADDCFLFMRANL 205
           RQGDP+SP+LF +C + +S      + N  +HG+K  K AP ++HL+FADD FLF RAN 
Sbjct: 226 RQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRANE 285

Query: 204 VEAHNTMDCISNYCNLSGQSVNFSKSSIIFSHNM 103
            E     D +  Y N S Q +N  KS I FS N+
Sbjct: 286 NETRALKDILDTYANASDQLINMQKSEIYFSRNV 319


>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
          Length = 405

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)
 Frame = -2

Query: 384 RQGDPISPFLFTICTKYVSRYTANLQSNKKIHGIKFLKHAPPITHLMFADDCFLFMRANL 205
           RQGDP+SP+LF +  + +S       +   IHG+K  + AP ++HL+FAD+CFLF RAN+
Sbjct: 22  RQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRGAPVVSHLLFADNCFLFCRANV 81

Query: 204 VEAHNTMDCISNYCNLSGQSVNFSKSSIIFSHNMHHRFQKLVAKL 70
           VEA   +  +  Y   SGQ +N SKS + FS NM    Q+ ++++
Sbjct: 82  VEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRI 126


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
 Frame = -2

Query: 384 RQGDPISPFLFTICTKYVSRYTANLQSNKKIHGIKFLKHAPPITHLMFADDCFLFMRANL 205
           RQGDP+SPFLF +C + +S    + +  K IHG+K      PI+HL FADD  LF+RA  
Sbjct: 643 RQGDPLSPFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSLLFIRATE 702

Query: 204 VEAHNTMDCISNYCNLSGQSVNFSKSSIIFSHNMH-HRFQKLVAKLSYSFI 55
            E  N MD +S Y   SGQ +N  KS + +S N+   +   L  KL++  +
Sbjct: 703 EEVENVMDILSTYEAASGQKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTV 753


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 42/105 (40%), Positives = 65/105 (61%)
 Frame = -2

Query: 384  RQGDPISPFLFTICTKYVSRYTANLQSNKKIHGIKFLKHAPPITHLMFADDCFLFMRANL 205
            RQGDP+SP+LF IC + +S      + +  I G K  K+AP I+HL+FADDCFLF +A  
Sbjct: 1058 RQGDPLSPYLFIICAEGLSSLIRQAEGSGTISGAKICKNAPIISHLLFADDCFLFFKAKS 1117

Query: 204  VEAHNTMDCISNYCNLSGQSVNFSKSSIIFSHNMHHRFQKLVAKL 70
             +A    + +  Y + SGQS+NF KS + +S N+    +  ++++
Sbjct: 1118 GQAQGMKNILEMYESSSGQSINFQKSEVFYSRNVDDAVKASISQI 1162


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 43/94 (45%), Positives = 58/94 (61%)
 Frame = -2

Query: 384 RQGDPISPFLFTICTKYVSRYTANLQSNKKIHGIKFLKHAPPITHLMFADDCFLFMRANL 205
           RQGDPISP+LF +C    S   +   S KKIHG +  + AP ++HL FADD  LF +A++
Sbjct: 637 RQGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSILFTKASV 696

Query: 204 VEAHNTMDCISNYCNLSGQSVNFSKSSIIFSHNM 103
            E     D IS Y   SGQ VN SK+ ++FS ++
Sbjct: 697 QECSMVADIISKYERASGQQVNLSKTEVVFSRSV 730