BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030118
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29860.3| unnamed protein product [Vitis vinifera]              149   2e-34
ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
ref|XP_002529617.1| pentatricopeptide repeat-containing protein,...   145   3e-33
dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]                          143   1e-32
ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containi...   138   5e-31

>emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  149 bits (377), Expect = 2e-34
 Identities = 70/95 (73%), Positives = 86/95 (90%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           MVSVI+ACA SGALD GKWVHA+I+K +I+ DLEL+TAL+NMYA+CGCIER+K++FD MP
Sbjct: 265 MVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMP 324

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQKDNV 285
           VKDTKAWSSMIVGLAI+GLAEDAL+ F +M++  V
Sbjct: 325 VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 359



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/95 (40%), Positives = 55/95 (57%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           M  V+ AC+   AL+ G+ VHA + K        + TAL+N YA+C  I  + K+FD++ 
Sbjct: 164 MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 223

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQKDNV 285
            ++  AWS+MI G A  GL  +AL +F  MQK  V
Sbjct: 224 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGV 258


>ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  149 bits (377), Expect = 2e-34
 Identities = 70/95 (73%), Positives = 86/95 (90%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           MVSVI+ACA SGALD GKWVHA+I+K +I+ DLEL+TAL+NMYA+CGCIER+K++FD MP
Sbjct: 196 MVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMP 255

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQKDNV 285
           VKDTKAWSSMIVGLAI+GLAEDAL+ F +M++  V
Sbjct: 256 VKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 290



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/95 (40%), Positives = 55/95 (57%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           M  V+ AC+   AL+ G+ VHA + K        + TAL+N YA+C  I  + K+FD++ 
Sbjct: 95  MAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEIT 154

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQKDNV 285
            ++  AWS+MI G A  GL  +AL +F  MQK  V
Sbjct: 155 DRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGV 189


>ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530902|gb|EEF32762.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 438

 Score =  145 bits (367), Expect = 3e-33
 Identities = 63/92 (68%), Positives = 85/92 (92%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           +V VI+ACA +GALD+G+W+HA+I K +I +DLEL TAL+NMYA+CGCIE++K++FD MP
Sbjct: 336 LVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEIFDYMP 395

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQK 276
           VKD+KAWSSMIVGLAIHGLAEDAL++F++M++
Sbjct: 396 VKDSKAWSSMIVGLAIHGLAEDALEMFSRMEE 427



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 57/92 (61%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           M  V+ ACA+  A + G+ +HA I +    ++  + ++L+++Y +C  I  +K++FD++ 
Sbjct: 235 MAFVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEIT 294

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQK 276
            ++   WS+MI G A  G+  +AL +F +MQ+
Sbjct: 295 ERNLVCWSAMISGYARVGMVNEALSMFREMQE 326


>dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  143 bits (361), Expect = 1e-32
 Identities = 65/92 (70%), Positives = 84/92 (91%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           +V V++ACA  GALD+GKWVHA+I K +I VDLEL TALINMYA+CGCIE+++++FD+M 
Sbjct: 196 LVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMR 255

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQK 276
           VKD+KAWSSMIVGLAIHGLAEDAL+VF++M++
Sbjct: 256 VKDSKAWSSMIVGLAIHGLAEDALNVFSRMEE 287



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/91 (32%), Positives = 54/91 (59%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           M  V+ AC+   AL+ GK +HA I +        + ++L+N Y++C  I  ++K+FD++ 
Sbjct: 95  MAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEIT 154

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKMQ 273
            ++   WS+M+ G A  G+  +AL +F +MQ
Sbjct: 155 ERNLVCWSAMVSGYARLGMINEALIMFREMQ 185


>ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 600

 Score =  138 bits (347), Expect = 5e-31
 Identities = 66/90 (73%), Positives = 80/90 (88%)
 Frame = +1

Query: 1   MVSVITACATSGALDLGKWVHAFIDKHVIKVDLELTTALINMYARCGCIERSKKLFDKMP 180
           MVSVI+ACA +GALDLGKWVHAFID+  I VDLEL+TALI+MYA+CG IER+K +FD M 
Sbjct: 232 MVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKSVFDSMV 291

Query: 181 VKDTKAWSSMIVGLAIHGLAEDALDVFAKM 270
            +DTKAWS+MIVGLA+HGLAEDAL +F++M
Sbjct: 292 ERDTKAWSAMIVGLAMHGLAEDALGLFSRM 321