BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030109
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...   247   6e-64
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]   247   6e-64
ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp....   240   1e-61
ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thal...   239   1e-61
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...   238   4e-61

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score =  247 bits (631), Expect = 6e-64
 Identities = 125/174 (71%), Positives = 143/174 (82%), Gaps = 1/174 (0%)
 Frame = -3

Query: 521 SREVELSEGSDEARDNLTTSDNEEENL-GVEDADDSEPSHVTLDGGLKIPEVIFSKLFDY 345
           S E EL E S++  DNL TS NEE N   +EDADD+EP  VTL+GGL+IPE IFSKLFDY
Sbjct: 345 SHEEELLEESEDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDY 404

Query: 344 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQW 165
           QKVGVQWLWELHCQ+ GGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW
Sbjct: 405 QKVGVQWLWELHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQW 464

Query: 164 RREARKWYPRFRVEILHDSAQVPSNRKGRTQSDESDCDTECSLASDEEISLSTK 3
           +REA+KWY  F VEILHDSAQ P++RK R +S ES    E SL SD+E +LS+K
Sbjct: 465 KREAKKWYQSFHVEILHDSAQDPASRKKRAKSYES----EDSLDSDDEENLSSK 514


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  247 bits (631), Expect = 6e-64
 Identities = 125/174 (71%), Positives = 143/174 (82%), Gaps = 1/174 (0%)
 Frame = -3

Query: 521 SREVELSEGSDEARDNLTTSDNEEENL-GVEDADDSEPSHVTLDGGLKIPEVIFSKLFDY 345
           S E EL E S++  DNL TS NEE N   +EDADD+EP  VTL+GGL+IPE IFSKLFDY
Sbjct: 367 SHEEELLEESEDTSDNLVTSSNEEVNREDIEDADDNEPPCVTLEGGLRIPESIFSKLFDY 426

Query: 344 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQW 165
           QKVGVQWLWELHCQ+ GGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI++CPVTLLRQW
Sbjct: 427 QKVGVQWLWELHCQQVGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQW 486

Query: 164 RREARKWYPRFRVEILHDSAQVPSNRKGRTQSDESDCDTECSLASDEEISLSTK 3
           +REA+KWY  F VEILHDSAQ P++RK R +S ES    E SL SD+E +LS+K
Sbjct: 487 KREAKKWYQSFHVEILHDSAQDPASRKKRAKSYES----EDSLDSDDEENLSSK 536


>ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297332105|gb|EFH62524.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1181

 Score =  240 bits (612), Expect = 1e-61
 Identities = 116/162 (71%), Positives = 133/162 (82%)
 Frame = -3

Query: 506 LSEGSDEARDNLTTSDNEEENLGVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGVQ 327
           L E  DE R   T+S  EEE    +DADD+E S V L+GGL IPE IF KLF+YQ+VGVQ
Sbjct: 333 LQESGDERRILTTSSCEEEELADFDDADDNETSSVQLEGGLNIPECIFRKLFEYQRVGVQ 392

Query: 326 WLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREARK 147
           WLWELHCQRAGGIIGDEMGLGKTIQV+SFLG+LHFSKMYKPSII+CPVTLLRQWRREA+K
Sbjct: 393 WLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQK 452

Query: 146 WYPRFRVEILHDSAQVPSNRKGRTQSDESDCDTECSLASDEE 21
           WYP F VEILHDSAQ   + KG+ +++ESD D+ECS+ SD E
Sbjct: 453 WYPDFHVEILHDSAQDSGHGKGQGKANESDYDSECSVDSDHE 494


>ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana]
           gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA
           repair and recombination protein [Arabidopsis thaliana]
           gi|330251711|gb|AEC06805.1| DNA excision repair protein
           E [Arabidopsis thaliana]
          Length = 1187

 Score =  239 bits (611), Expect = 1e-61
 Identities = 120/168 (71%), Positives = 136/168 (80%), Gaps = 1/168 (0%)
 Frame = -3

Query: 521 SREVELSEGSDEARDNLTTSDNEEENLG-VEDADDSEPSHVTLDGGLKIPEVIFSKLFDY 345
           SRE    +GS + R  LTTS  EEE L   +DADD+E S V L+GGL IPE IF KLFDY
Sbjct: 329 SREDSSLQGSGDGRRILTTSSCEEEELDDFDDADDNERSSVQLEGGLNIPECIFRKLFDY 388

Query: 344 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQW 165
           Q+VGVQWLWELHCQRAGGIIGDEMGLGKTIQV+SFLG+LHFSKMYKPSII+CPVTLLRQW
Sbjct: 389 QRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQW 448

Query: 164 RREARKWYPRFRVEILHDSAQVPSNRKGRTQSDESDCDTECSLASDEE 21
           RREA+KWYP F VEILHDSAQ   + KG+ ++ ESD D+E S+ SD E
Sbjct: 449 RREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYDSESSVDSDHE 496


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222857105|gb|EEE94652.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1206

 Score =  238 bits (607), Expect = 4e-61
 Identities = 122/173 (70%), Positives = 139/173 (80%), Gaps = 4/173 (2%)
 Frame = -3

Query: 509 ELSEGSDEARDNLTTSDNEEENLGVEDADDSEPSHVTLDGGLKIPEVIFSKLFDYQKVGV 330
           ++ E  D  R NL TS +EE+   V+D  D++   +TL+GGLKIPE IFSKLFDYQKVGV
Sbjct: 344 DMGESEDSGR-NLVTSISEED---VDDGYDNDSPFITLEGGLKIPEAIFSKLFDYQKVGV 399

Query: 329 QWLWELHCQRAGGIIGDEMGLGKTIQVISFLGALHFSKMYKPSIIVCPVTLLRQWRREAR 150
           QWLWELHCQRAGGIIGDEMGLGKTIQV+SFLGALHFS MYKPSI+VCPVTLLRQW+REA+
Sbjct: 400 QWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAQ 459

Query: 149 KWYPRFRVEILHDSAQVPSNR----KGRTQSDESDCDTECSLASDEEISLSTK 3
           KWYPRF VE+LHDSAQ  S R    K R QS ESDC+TE SL SD E S+S +
Sbjct: 460 KWYPRFHVELLHDSAQDVSCRDPLKKKRAQSYESDCETEDSLDSDYEGSISCR 512