BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030077
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    70   8e-11
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    67   3e-09
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    65   9e-09
emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    64   2e-08
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    64   3e-08

>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score = 70.1 bits (170), Expect(2) = 8e-11
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
 Frame = -1

Query: 343 LPESFPKVLNLLDLKLHGFHKEHYLVGMGTN-TGRKLTYFHNL--QRVTLSSTATMDDFI 173
           LP + P+VL+L++L++     E+ L  +         T   NL  ++V +    ++ +F+
Sbjct: 116 LPNNLPRVLDLMNLRIRELGHEYVLHHLNYKPNSSSFTDAGNLYMEKVVMIWLNSLTEFV 175

Query: 172 IIALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTVDWHT 5
           ++ +H    L  F++GD+RW  I +     DD+I YKG+FYAVD  GRT+ V   T
Sbjct: 176 LLTIHVSGKLAIFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVVAMDT 231



 Score = 21.9 bits (45), Expect(2) = 8e-11
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 378 IFYPLSVSRSTLYPNHFQR 322
           +F PLS  RST  PN+  R
Sbjct: 104 LFDPLSRCRSTSLPNNLPR 122


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = -1

Query: 343 LPESFPKVLNLLDLKLHGFHKEHYLVGMGTNT-GRKLTYFHNLQRVTLSSTATMDDFIII 167
           LP  FPK  +   L++    +E+ L  M     G        +++V   S    DDF ++
Sbjct: 115 LPPDFPKTFDFSGLRVFELGQEYVLEYMDYRPPGNAYLGSLYMEKVAFCS-GNGDDFWLL 173

Query: 166 ALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTVD 14
            +H    L  FR+GD++W  I D    +DD+I + GKFYAVD  GRT+ VD
Sbjct: 174 TIHLSGKLAMFRSGDKKWMIIDDMQSPYDDVIFFDGKFYAVDNTGRTVVVD 224


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
 Frame = -1

Query: 343 LPESFPKVLNLLDLKLHGFHKEHYL--VGMGTNTGRKLTYFHNL--QRVTLSSTATMDDF 176
           L  S P+VL+L++L++     E+ L  V    N+    T   NL  ++V +       +F
Sbjct: 116 LHHSLPRVLDLMNLRIRELGHEYVLHHVSYKPNSS-SFTDAGNLYMEKVVMIWLNCETEF 174

Query: 175 IIIALHSWKYLVYFRAGDERWNFIGDKNCEHDDLINYKGKFYAVDKMGRTLTV 17
           +++ +H    L  F++GD+RW  I +     DD+I YKG+FYAVD  GRT+ V
Sbjct: 175 VLLTIHVSGKLAMFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVDNTGRTVVV 227


>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
 Frame = -1

Query: 352 VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFH--NLQRVTLSSTATMDD 179
           +  LP++FPKVLN LD ++    K + L       G+ +T F   ++    L   +  D+
Sbjct: 518 IKHLPKNFPKVLNTLDFRVREVGKTYGLRFFDVR-GKPJTRFEFKSILITKLIMFSKGDE 576

Query: 178 FIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDWHT 5
           + ++ +H    L  +R G+++W+ I D  +    DD+I YKG+FYA+D  GR + +D  +
Sbjct: 577 YGLMMIHFRGGLALWRLGEKKWSLIDDGAEKSHFDDVIYYKGRFYAIDYXGRIVVIDADS 636

Query: 4   L 2
           L
Sbjct: 637 L 637



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
 Frame = -1

Query: 352 VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFHN----LQRVTLSSTATM 185
           +  LP++FPKVLN L+ ++    K + L       G+ +T F      +++V + S    
Sbjct: 128 IQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDVR-GKPITSFEFKSILIKKVIMFSKG-- 184

Query: 184 DDFIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDW 11
           D++ ++ +H    L  +R G+E+W+ I D  +    DD+I YKG+FYA+D  GR + +D 
Sbjct: 185 DEYGLMMIHIRGRLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDA 244

Query: 10  HTL 2
            +L
Sbjct: 245 DSL 247


>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
 Frame = -1

Query: 352 VNPLPESFPKVLNLLDLKLHGFHKEHYLVGMGTNTGRKLTYFHN----LQRVTLSSTATM 185
           +  LP++FPKVLN L+ ++    K + L       G+ +T F      +++V + S    
Sbjct: 128 IQHLPKNFPKVLNTLNFRVREVGKAYGLRFFDVR-GKPITSFEFKSILIKKVIMFSKG-- 184

Query: 184 DDFIIIALHSWKYLVYFRAGDERWNFIGD--KNCEHDDLINYKGKFYAVDKMGRTLTVDW 11
           D++ ++ +H    L  +R G+E+W+ I D  +    DD+I YKG+FYA+D  GR + +D 
Sbjct: 185 DEYGLMMIHIRGRLALWRLGEEKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDA 244

Query: 10  HTL 2
            +L
Sbjct: 245 DSL 247