BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030047
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    96   4e-18
ref|XP_002509520.1| pentatricopeptide repeat-containing protein,...    95   7e-18
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]    93   2e-17

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  137 bits (344), Expect = 1e-30
 Identities = 66/127 (51%), Positives = 92/127 (72%), Gaps = 5/127 (3%)
 Frame = +3

Query: 15  LTTLTNP-----NQQKTLSLLRSCKTVHQIKQLHAQLILTDQISNTFLATKLLEFYAITT 179
           +TT+T       +  KTLS L+SCK+   +K++HAQLI+T QI +TF+ATK +E YA++ 
Sbjct: 14  ITTVTTKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSA 73

Query: 180 KNIDYALGVFNQISEPNAYTWTSIIRGFVEIKKPKNGIEFYNKMVLHGIEPNKFTFIFLL 359
           +NIDYA  VF  I+ P++Y+WT++IRGFVE K P+  +EFY  M   G+E NKFTF+F+L
Sbjct: 74  RNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVL 133

Query: 360 KAYSLIP 380
           KAY L P
Sbjct: 134 KAYGLRP 140


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 46/126 (36%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
 Frame = +3

Query: 18  TTLTNPNQQKTLSLLRSCKTVHQIKQLHAQLILTDQISNTFLATKLLEFYAIT-TKNIDY 194
           TT T       LSLL +CK+  Q+KQ+ AQ+ILT  I + F +++L+ F AI+ ++N+DY
Sbjct: 46  TTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDY 105

Query: 195 ALGVFNQISEPNAYTWTSIIRGFVEIKKPKNGIEFYNKMVLH-GIEPNKFTFIFLLKAYS 371
            + + N +  PN ++W ++IRG VE + P+ G+  Y +M+   G  P+ +T+ FL K  +
Sbjct: 106 CIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCA 165

Query: 372 LIPIGY 389
            + + Y
Sbjct: 166 NLVLSY 171


>ref|XP_002509520.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549419|gb|EEF50907.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 413

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
 Frame = +3

Query: 36  NQQKTLSLLRSCKTVHQIKQLHAQLILTDQISNTFLATKLLEFYAIT-TKNIDYALGVFN 212
           N    + ++  C ++ Q+KQ+HAQ+ILT +IS+ F A++LL F A++ +++I+YA+ +F 
Sbjct: 48  NTSIIMDMVDKCTSMTQLKQIHAQMILTSRISDHFAASRLLSFCALSNSRDINYAIKLFK 107

Query: 213 QISEPNAYTWTSIIRGFVEIKKPKNGIEFYNKMVLHGIEPNKFTFIFLLKAYSLIPI 383
            I +PN + W +IIR       P   + FY +M+  G+ PNK+TF FLLK  S   I
Sbjct: 108 SIQDPNIFMWNTIIRALANSSNPDQALFFYIQMLRLGVCPNKYTFPFLLKGCSFCSI 164


>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
 Frame = +3

Query: 48  TLSLLRSCKTVHQIKQLHAQLILTDQISNTFLATKLLEFYAITT-KNIDYALGVFNQISE 224
           +L+LL +CK+   +KQ+H+Q+I T   +  F  +KL+EF AI+   N+ YAL +F  I +
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 225 PNAYTWTSIIRGFVEIKKPKNGIEFYNKMVLHGIEPNKFTFIFLLKA 365
           PN + W ++IRG      P   I+FY +M+L G+EPN +TF FLLK+
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141


>emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
 Frame = +3

Query: 48  TLSLLRSCKTVHQIKQLHAQLILTDQISNTFLATKLLEFYAITT-KNIDYALGVFNQISE 224
           +L+LL +CK+   +KQ+H+Q+I T   +  F  +KL+EF AI+   N+ YAL +F  I +
Sbjct: 35  SLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94

Query: 225 PNAYTWTSIIRGFVEIKKPKNGIEFYNKMVLHGIEPNKFTFIFLLKA 365
           PN + W ++IRG      P   I+FY +M+L G+EPN +TF FLLK+
Sbjct: 95  PNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141