BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00030033
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16128.3| unnamed protein product [Vitis vinifera]              124   1e-26
emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]   124   1e-26
ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|2...   120   3e-25
ref|XP_002532847.1| pentatricopeptide repeat-containing protein,...   118   1e-24
ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containi...   111   1e-22

>emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  124 bits (312), Expect = 1e-26
 Identities = 59/83 (71%), Positives = 68/83 (81%)
 Frame = -2

Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443
           PNDVIYNTMIYGYCK+ SSYRALRLLKEM E GM+PN+ASY  TI +LCKD KW E E L
Sbjct: 477 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVL 536

Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374
           L +M+  GL+PS SI++ ISKAR
Sbjct: 537 LKDMIELGLKPSISIWNMISKAR 559



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
 Frame = -2

Query: 619 NDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDLL 440
           N V YNT+I G C++     A RL+  M+  G+ PN+ SY   I   C  G   +   L 
Sbjct: 303 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 362

Query: 439 NEMVTSGLRPSDSIYSTI----SKARN 371
           N+M +SG  PS + Y+ +    S+A+N
Sbjct: 363 NQMKSSGQSPSLATYNILIAGFSEAKN 389


>emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/83 (71%), Positives = 68/83 (81%)
 Frame = -2

Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443
           PNDVIYNTMIYGYCK+ SSYRALRLLKEM E GM+PN+ASY  TI +LCKD KW E E L
Sbjct: 464 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVL 523

Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374
           L +M+  GL+PS SI++ ISKAR
Sbjct: 524 LKDMIELGLKPSISIWNMISKAR 546



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
 Frame = -2

Query: 619 NDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDLL 440
           N V YNT+I G C++     A RL+  M+  G+ PN+ SY   I   C  G   +   L 
Sbjct: 290 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 349

Query: 439 NEMVTSGLRPSDSIYSTI----SKARN 371
           N+M +SG  PS + Y+ +    S+A+N
Sbjct: 350 NQMKSSGQSPSLATYNILIAGFSEAKN 376


>ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|222844663|gb|EEE82210.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score =  120 bits (300), Expect = 3e-25
 Identities = 55/84 (65%), Positives = 70/84 (83%)
 Frame = -2

Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443
           P+DVIYNTMI+GYCK+D+SYRALRLL+EM  KG++PN+ASY   I VLCKDGKW+E E L
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534

Query: 442 LNEMVTSGLRPSDSIYSTISKARN 371
           L++M+   L+PS SI + ISKA+N
Sbjct: 535 LDKMIELQLKPSASILNMISKAKN 558


>ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527384|gb|EEF29525.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score =  118 bits (295), Expect = 1e-24
 Identities = 55/83 (66%), Positives = 67/83 (80%)
 Frame = -2

Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443
           PN+V+YNTMI GYCK  +S+RALR LKEM +K ++PN+ASY  TI +LCKDGKWQE E L
Sbjct: 416 PNEVVYNTMINGYCKAGNSFRALRFLKEMEDKRLVPNVASYSSTIGILCKDGKWQEAEIL 475

Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374
           LN+M  SGL PS SIY+ ISKA+
Sbjct: 476 LNKMRGSGLEPSVSIYNIISKAK 498


>ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  111 bits (277), Expect = 1e-22
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = -2

Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443
           PN VIYNTMI+GYCK+ SSYRALRLL EM + GM+PN+AS+  TI +LC+D KW+E E L
Sbjct: 471 PNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELL 530

Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374
           L +M+ SGL+PS S+Y  + K +
Sbjct: 531 LGQMINSGLKPSVSLYKMVHKVK 553