BLASTX nr result
ID: Coptis24_contig00030033
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00030033 (623 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI16128.3| unnamed protein product [Vitis vinifera] 124 1e-26 emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera] 124 1e-26 ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|2... 120 3e-25 ref|XP_002532847.1| pentatricopeptide repeat-containing protein,... 118 1e-24 ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containi... 111 1e-22 >emb|CBI16128.3| unnamed protein product [Vitis vinifera] Length = 563 Score = 124 bits (312), Expect = 1e-26 Identities = 59/83 (71%), Positives = 68/83 (81%) Frame = -2 Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443 PNDVIYNTMIYGYCK+ SSYRALRLLKEM E GM+PN+ASY TI +LCKD KW E E L Sbjct: 477 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVL 536 Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374 L +M+ GL+PS SI++ ISKAR Sbjct: 537 LKDMIELGLKPSISIWNMISKAR 559 Score = 56.2 bits (134), Expect = 5e-06 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Frame = -2 Query: 619 NDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDLL 440 N V YNT+I G C++ A RL+ M+ G+ PN+ SY I C G + L Sbjct: 303 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 362 Query: 439 NEMVTSGLRPSDSIYSTI----SKARN 371 N+M +SG PS + Y+ + S+A+N Sbjct: 363 NQMKSSGQSPSLATYNILIAGFSEAKN 389 >emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera] Length = 550 Score = 124 bits (311), Expect = 1e-26 Identities = 59/83 (71%), Positives = 68/83 (81%) Frame = -2 Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443 PNDVIYNTMIYGYCK+ SSYRALRLLKEM E GM+PN+ASY TI +LCKD KW E E L Sbjct: 464 PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVL 523 Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374 L +M+ GL+PS SI++ ISKAR Sbjct: 524 LKDMIELGLKPSISIWNMISKAR 546 Score = 56.2 bits (134), Expect = 5e-06 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Frame = -2 Query: 619 NDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDLL 440 N V YNT+I G C++ A RL+ M+ G+ PN+ SY I C G + L Sbjct: 290 NVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLF 349 Query: 439 NEMVTSGLRPSDSIYSTI----SKARN 371 N+M +SG PS + Y+ + S+A+N Sbjct: 350 NQMKSSGQSPSLATYNILIAGFSEAKN 376 >ref|XP_002302937.1| predicted protein [Populus trichocarpa] gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa] Length = 564 Score = 120 bits (300), Expect = 3e-25 Identities = 55/84 (65%), Positives = 70/84 (83%) Frame = -2 Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443 P+DVIYNTMI+GYCK+D+SYRALRLL+EM KG++PN+ASY I VLCKDGKW+E E L Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534 Query: 442 LNEMVTSGLRPSDSIYSTISKARN 371 L++M+ L+PS SI + ISKA+N Sbjct: 535 LDKMIELQLKPSASILNMISKAKN 558 >ref|XP_002532847.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527384|gb|EEF29525.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 505 Score = 118 bits (295), Expect = 1e-24 Identities = 55/83 (66%), Positives = 67/83 (80%) Frame = -2 Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443 PN+V+YNTMI GYCK +S+RALR LKEM +K ++PN+ASY TI +LCKDGKWQE E L Sbjct: 416 PNEVVYNTMINGYCKAGNSFRALRFLKEMEDKRLVPNVASYSSTIGILCKDGKWQEAEIL 475 Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374 LN+M SGL PS SIY+ ISKA+ Sbjct: 476 LNKMRGSGLEPSVSIYNIISKAK 498 >ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g11690-like [Glycine max] Length = 556 Score = 111 bits (277), Expect = 1e-22 Identities = 50/83 (60%), Positives = 65/83 (78%) Frame = -2 Query: 622 PNDVIYNTMIYGYCKQDSSYRALRLLKEMREKGMIPNMASYGLTISVLCKDGKWQEGEDL 443 PN VIYNTMI+GYCK+ SSYRALRLL EM + GM+PN+AS+ TI +LC+D KW+E E L Sbjct: 471 PNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEKWKEAELL 530 Query: 442 LNEMVTSGLRPSDSIYSTISKAR 374 L +M+ SGL+PS S+Y + K + Sbjct: 531 LGQMINSGLKPSVSLYKMVHKVK 553