BLASTX nr result
ID: Coptis24_contig00030005
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00030005
(498 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi... 243 1e-62
ref|XP_002521664.1| pentatricopeptide repeat-containing protein,... 230 8e-59
ref|XP_003590744.1| Pentatricopeptide repeat-containing protein ... 218 3e-55
ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containi... 217 9e-55
ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|2... 217 9e-55
>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 243 bits (620), Expect = 1e-62
Identities = 118/165 (71%), Positives = 135/165 (81%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SWNAILSGYVNAGR+ + K F+ +PE+NLLTW VMISG AQNG GEE+LKLFN ++ E
Sbjct: 363 SWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEG 422
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAH 138
EPCDY F L HGRQLHAQLVR GF+SSLSAGNAL+TMYAKCGVVEAAH
Sbjct: 423 FEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAH 482
Query: 137 HVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENILPD 3
+F+TMPY+DSVSWNAMIAALGQHGHG +AL+LF+ MLKE+ILPD
Sbjct: 483 CLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527
Score = 106 bits (265), Expect = 2e-21
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 4/167 (2%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SW +++GYV G + +Q D + EK ++ W MISG+ +G EAL++F + +
Sbjct: 227 SWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG 286
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRF----GFESSLSAGNALMTMYAKCGVV 150
+ ++T+ HG+Q+HA ++R + SLS NAL T+Y KCG V
Sbjct: 287 IQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKV 346
Query: 149 EAAHHVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENIL 9
+ A VF MP D VSWNA+++ G +EA F+EM + N+L
Sbjct: 347 DEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLL 393
>ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539055|gb|EEF40651.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 574
Score = 230 bits (587), Expect = 8e-59
Identities = 111/165 (67%), Positives = 132/165 (80%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SWN ILSGY+NAGR+ + K F+ +PEKN+L+W VMISG AQNG GEE LKLFN +++
Sbjct: 365 SWNTILSGYLNAGRMDEAKTFFEEMPEKNILSWVVMISGLAQNGFGEEGLKLFNQMKLRG 424
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAH 138
EPCDY F LEHGRQLHAQLVRFGF+SSLSAGNAL+TMYA+CGVVEAA
Sbjct: 425 FEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSSLSAGNALITMYARCGVVEAAR 484
Query: 137 HVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENILPD 3
+F++MP VDSVSWNAMIAALGQHG+G +A++LF+EML E ILPD
Sbjct: 485 TLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPD 529
Score = 106 bits (264), Expect = 2e-21
Identities = 58/167 (34%), Positives = 94/167 (56%), Gaps = 4/167 (2%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SW I++GYV + +++FD + EK ++ W MISG+ GL +EAL++F + +
Sbjct: 229 SWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMISGYMHRGLYQEALEMFRKMYLAG 288
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRF----GFESSLSAGNALMTMYAKCGVV 150
+ ++T+ L+HG+Q+HA +++ + SL NAL+T+Y KCG V
Sbjct: 289 LKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTLYWKCGKV 348
Query: 149 EAAHHVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENIL 9
+ A VF MP D VSWN +++ G +EA F+EM ++NIL
Sbjct: 349 DEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNIL 395
Score = 59.3 bits (142), Expect = 3e-07
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Frame = -2
Query: 485 ILSGYVNAGRVGDGKQLFDVIP--EKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHE 312
+++ Y G + K++F P ++ + + MI+ ++ N G A++LF ++ D
Sbjct: 89 LINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCDMKRNDFR 148
Query: 311 PCDYTFXXXXXXXXXXXXLE-HGRQLHAQLVRFGFESSLSAGNALMTMYAKC-------- 159
P ++TF E H +QLH +V+ G S NAL+++Y KC
Sbjct: 149 PDNFTFTSVLGALALVAENERHCQQLHCTVVKSGTWFVTSVLNALISVYVKCASSPSVIS 208
Query: 158 -GVVEAAHHVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENIL 9
++ AA +F MP D +SW +I ++ + A ++F M ++ ++
Sbjct: 209 SSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVV 259
>ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 795
Score = 218 bits (556), Expect = 3e-55
Identities = 101/165 (61%), Positives = 130/165 (78%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SWNA+LSGYVNA R+ + +F +PE+N+LTW VMISG AQNG GEE LKLFN ++ E
Sbjct: 359 SWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEG 418
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAH 138
EPCDY F L++G+Q+H+Q++R G +S LSAGNAL+TMY++CGVVE+A
Sbjct: 419 LEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAE 478
Query: 137 HVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENILPD 3
VF+TMPYVDSVSWNAMIAAL QHGHG +A++LF++M+KE+ILPD
Sbjct: 479 SVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPD 523
Score = 80.1 bits (196), Expect = 2e-13
Identities = 60/203 (29%), Positives = 84/203 (41%), Gaps = 39/203 (19%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SW +++GYV + ++L D + + W MISG+ + GL EEA F +
Sbjct: 219 SWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG 278
Query: 317 HEPCDYTFXXXXXXXXXXXXL----EHGRQLHAQLVRFGFESS----LSAGNALMTMYAK 162
+ +YT+ GRQ+H ++R E S LS NAL+T Y K
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTK 338
Query: 161 CGVVEAAHHVFITMPYVDSVSWNA-------------------------------MIAAL 75
+ A VF MP D +SWNA MI+ L
Sbjct: 339 YDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGL 398
Query: 74 GQHGHGEEALKLFKEMLKENILP 6
Q+G GEE LKLF +M E + P
Sbjct: 399 AQNGFGEEGLKLFNQMKSEGLEP 421
Score = 56.2 bits (134), Expect = 3e-06
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Frame = -2
Query: 491 NAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHE 312
NA+++ Y G V + +F +P + ++W MI+ AQ+G G +A++LF + ED
Sbjct: 462 NALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDIL 521
Query: 311 PCDYTFXXXXXXXXXXXXLEHGRQ-LHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAHH 135
P TF ++ GR R+G L+ + + G+ A
Sbjct: 522 PDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQS 581
Query: 134 VFITMPY-VDSVSWNAMIAALGQHGHGEEALKLFKEMLK 21
V +MP+ + W A++A HG+ E ++ +L+
Sbjct: 582 VIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLE 620
>ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 217 bits (552), Expect = 9e-55
Identities = 101/165 (61%), Positives = 130/165 (78%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
+WN +LSGYVNAGR+ + K F +PEKNLLTW VMISG AQNG GE+ALKLFN ++++
Sbjct: 361 TWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG 420
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAH 138
+EP DY F LE+GRQLHAQ+V G +S+LS GNA++TMYA+CG+VEAA
Sbjct: 421 YEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAAR 480
Query: 137 HVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENILPD 3
+F+TMP+VD VSWN+MIAALGQHGHG +A++L+++MLKE ILPD
Sbjct: 481 TMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPD 525
Score = 94.0 bits (232), Expect = 1e-17
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = -2
Query: 494 WNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDH 315
W +++GYV G + +++ D + E+ + W MISG+ +GL E+AL LF +R+
Sbjct: 226 WTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGV 285
Query: 314 EPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESS----LSAGNALMTMYAKCGVVE 147
+ + T+ G+Q+HA +++ LS GN L+T+Y K G V+
Sbjct: 286 QVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVD 345
Query: 146 AAHHVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENIL 9
A +F MP D ++WN +++ G EEA F +M ++N+L
Sbjct: 346 GARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLL 391
Score = 62.8 bits (151), Expect = 3e-08
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 43/196 (21%)
Frame = -2
Query: 485 ILSGYVNAGRVGDGKQLFDVIP--EKNLLTWAVMISGFAQNGLGEEALKLFNCLRVEDHE 312
+++ Y G + +++F+ P ++ + + MI+G++ G A++LF +R + +
Sbjct: 85 LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144
Query: 311 PCDYTFXXXXXXXXXXXXLEHG-RQLHAQLVRFGFESSLSAGNALMTMYAKC-------- 159
P D+TF E Q+H +V+FG E + NAL+++Y KC
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSS 204
Query: 158 --------------------------------GVVEAAHHVFITMPYVDSVSWNAMIAAL 75
G + A + TM ++WNAMI+
Sbjct: 205 SSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGY 264
Query: 74 GQHGHGEEALKLFKEM 27
HG E+AL LF++M
Sbjct: 265 LHHGLFEDALTLFRKM 280
>ref|XP_002302000.1| predicted protein [Populus trichocarpa] gi|222843726|gb|EEE81273.1|
predicted protein [Populus trichocarpa]
Length = 797
Score = 217 bits (552), Expect = 9e-55
Identities = 103/165 (62%), Positives = 128/165 (77%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SWN ILSGYVN + + K F+ +PEKN+L+W +MISG AQ G EEALK FN ++++
Sbjct: 361 SWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRFGFESSLSAGNALMTMYAKCGVVEAAH 138
EPCDY F L+HGRQLHAQ+VR+G+ESSLSAGNAL+TMYA+CGVV+AAH
Sbjct: 421 FEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAH 480
Query: 137 HVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENILPD 3
+FI MP VD++SWNAMIAALGQHG G +A++LF+EMLKE ILPD
Sbjct: 481 CLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPD 525
Score = 84.3 bits (207), Expect = 9e-15
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Frame = -2
Query: 497 SWNAILSGYVNAGRVGDGKQLFDVIPEKNLLTWAVMISGFAQNGLGEEALKLFNCLRVED 318
SW I++GYV + K+ + +K + W MISG+A GL EA ++F + +
Sbjct: 225 SWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSK 284
Query: 317 HEPCDYTFXXXXXXXXXXXXLEHGRQLHAQLVRF----GFESSLSAGNALMTMYAKCGVV 150
+ ++TF G+++HA ++ + ++ NAL+T Y KCG V
Sbjct: 285 IQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKV 344
Query: 149 EAAHHVFITMPYVDSVSWNAMIAALGQHGHGEEALKLFKEMLKENIL 9
+ A +F MP D VSWN +++ +EA F EM ++NIL
Sbjct: 345 DIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNIL 391