BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029984
         (857 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003587346.1| cytochrome c oxidase subunit 1 [Cucurbita pe...   567   e-160
ref|YP_003587228.1| cytochrome c oxidase subunit 1 [Citrullus la...   567   e-160
dbj|BAD83459.2| cytochrome oxidase subunit 1, partial (mitochond...   564   e-159
gb|AAP58356.1| cytoplasmic male sterility-associated cytochrome ...   563   e-158
ref|NP_085587.1| cytochrome c oxidase subunit 1 [Arabidopsis tha...   563   e-158

>ref|YP_003587346.1| cytochrome c oxidase subunit 1 [Cucurbita pepo]
            gi|259156811|gb|ACV96672.1| cytochrome c oxidase subunit
            1 [Cucurbita pepo]
          Length = 527

 Score =  567 bits (1462), Expect = e-160
 Identities = 272/273 (99%), Positives = 273/273 (100%)
 Frame = -3

Query: 855  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 676
            FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI
Sbjct: 254  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 313

Query: 675  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 496
            IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY
Sbjct: 314  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 373

Query: 495  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGKIHFWITFFGVNLTFFPMHFL 316
            YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLG+IHFWITFFGVNLTFFPMHFL
Sbjct: 374  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFL 433

Query: 315  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 136
            GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV
Sbjct: 434  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 493

Query: 135  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 37
            EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV
Sbjct: 494  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 526


>ref|YP_003587228.1| cytochrome c oxidase subunit 1 [Citrullus lanatus]
            gi|259156773|gb|ACV96635.1| cytochrome c oxidase subunit
            1 [Citrullus lanatus]
          Length = 527

 Score =  567 bits (1462), Expect = e-160
 Identities = 272/273 (99%), Positives = 273/273 (100%)
 Frame = -3

Query: 855  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 676
            FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI
Sbjct: 254  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 313

Query: 675  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 496
            IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY
Sbjct: 314  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 373

Query: 495  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGKIHFWITFFGVNLTFFPMHFL 316
            YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLG+IHFWITFFGVNLTFFPMHFL
Sbjct: 374  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFL 433

Query: 315  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 136
            GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV
Sbjct: 434  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 493

Query: 135  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 37
            EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV
Sbjct: 494  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 526


>dbj|BAD83459.2| cytochrome oxidase subunit 1, partial (mitochondrion) [Nicotiana
            tabacum]
          Length = 527

 Score =  564 bits (1454), Expect = e-159
 Identities = 270/273 (98%), Positives = 272/273 (99%)
 Frame = -3

Query: 855  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 676
            FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI
Sbjct: 254  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 313

Query: 675  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 496
            IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY
Sbjct: 314  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 373

Query: 495  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGKIHFWITFFGVNLTFFPMHFL 316
            YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLG+IHFWITFFGVN+TFFPMHFL
Sbjct: 374  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNMTFFPMHFL 433

Query: 315  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 136
            GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSG NKRCAPSPWAV
Sbjct: 434  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGKNKRCAPSPWAV 493

Query: 135  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 37
            EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV
Sbjct: 494  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 526


>gb|AAP58356.1| cytoplasmic male sterility-associated cytochrome oxidase subunit I
            [Brassica juncea]
          Length = 527

 Score =  563 bits (1452), Expect = e-158
 Identities = 270/273 (98%), Positives = 272/273 (99%)
 Frame = -3

Query: 855  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 676
            FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI
Sbjct: 254  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 313

Query: 675  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 496
            IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY
Sbjct: 314  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 373

Query: 495  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGKIHFWITFFGVNLTFFPMHFL 316
            YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLG+IHFWITFFGVNLTFFPMHFL
Sbjct: 374  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFL 433

Query: 315  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 136
            GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWA+
Sbjct: 434  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAL 493

Query: 135  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 37
            E NSTTLEWMVQSPPAFHTFGELPAIKETKSYV
Sbjct: 494  ELNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 526


>ref|NP_085587.1| cytochrome c oxidase subunit 1 [Arabidopsis thaliana]
            gi|112253911|ref|YP_717165.1| cytochrome c oxidase
            subunit 1 [Brassica napus]
            gi|353526416|ref|YP_004927488.1| cox1 (mitochondrion)
            [Brassica oleracea] gi|353526497|ref|YP_004927568.1| cox1
            (mitochondrion) [Brassica carinata]
            gi|353526672|ref|YP_004927841.1| cox1 (mitochondrion)
            [Brassica rapa subsp. campestris]
            gi|353531355|ref|YP_004927744.1| cox1 (mitochondrion)
            [Brassica juncea] gi|404481670|ref|YP_006666004.1|
            cytochrome c oxidase subunit 1 (mitochondrion) [Raphanus
            sativus] gi|45593157|sp|P60620.1|COX1_ARATH RecName:
            Full=Cytochrome c oxidase subunit 1; AltName:
            Full=Cytochrome c oxidase polypeptide I
            gi|45593158|sp|P60621.1|COX1_RAPSA RecName:
            Full=Cytochrome c oxidase subunit 1; AltName:
            Full=Cytochrome c oxidase polypeptide I
            gi|297416|emb|CAA40873.1| cytochrome c oxidase subunit I
            [Raphanus sativus] gi|1785788|emb|CAA69785.1| cytochrome
            c oxidase subunit 1 [Arabidopsis thaliana]
            gi|31790107|gb|AAP58355.1| cytochrome oxidase subunit I
            [Brassica juncea] gi|37591113|dbj|BAC98915.1| cytochrome
            c oxidase subunit 1 [Brassica napus]
            gi|335354860|gb|AEH43416.1| cox1 [Brassica rapa subsp.
            campestris] gi|335354961|gb|AEH43516.1| cox1 [Brassica
            oleracea] gi|335355028|gb|AEH43582.1| cox1 [Brassica
            carinata] gi|335355088|gb|AEH43641.1| cox1 [Brassica
            juncea] gi|339511287|emb|CBX48342.1| cox1 [Brassica
            napus] gi|339773248|gb|AEK01272.1| cox1 [Arabidopsis
            thaliana] gi|339773256|gb|AEK01279.1| cox1 [Arabidopsis
            thaliana] gi|339773308|gb|AEK01330.1| cox1 [Arabidopsis
            thaliana] gi|400278288|dbj|BAM36212.1| cytochrome c
            oxidase subunit 1 (mitochondrion) [Raphanus sativus]
            gi|400278324|dbj|BAM36247.1| cytochrome c oxidase subunit
            1 (mitochondrion) [Raphanus sativus]
          Length = 527

 Score =  563 bits (1452), Expect = e-158
 Identities = 270/273 (98%), Positives = 272/273 (99%)
 Frame = -3

Query: 855  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 676
            FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI
Sbjct: 254  FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMI 313

Query: 675  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 496
            IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY
Sbjct: 314  IAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTY 373

Query: 495  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGKIHFWITFFGVNLTFFPMHFL 316
            YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLG+IHFWITFFGVNLTFFPMHFL
Sbjct: 374  YVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFL 433

Query: 315  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAV 136
            GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWA+
Sbjct: 434  GLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAL 493

Query: 135  EQNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 37
            E NSTTLEWMVQSPPAFHTFGELPAIKETKSYV
Sbjct: 494  ELNSTTLEWMVQSPPAFHTFGELPAIKETKSYV 526