BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029967
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   124   8e-27
ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|2...   122   3e-26
ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
ref|XP_003610936.1| Pentatricopeptide repeat-containing protein ...   121   7e-26
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              120   1e-25

>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  124 bits (311), Expect = 8e-27
 Identities = 58/97 (59%), Positives = 71/97 (73%)
 Frame = -1

Query: 292 NTVTWNTITAGCLNEANYRGALELISHMRYRGVNLDSVTIVIGLGACSETGFITMGRELH 113
           N +TWNTI  GC+   N+  ALEL+SHMR  G+++DSV  +IGLGACS  G I +GRE+H
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIH 353

Query: 112 GYAVHRCFDGFDIVKNALITMYSRCNDLRLAYLLFRS 2
           G A+   +DG D VKNALITMYSRC  LR AY LF+S
Sbjct: 354 GSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQS 390


>ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|222862390|gb|EEE99896.1|
           predicted protein [Populus trichocarpa]
          Length = 683

 Score =  122 bits (306), Expect = 3e-26
 Identities = 56/97 (57%), Positives = 71/97 (73%)
 Frame = -1

Query: 292 NTVTWNTITAGCLNEANYRGALELISHMRYRGVNLDSVTIVIGLGACSETGFITMGRELH 113
           N +TWNTI  GC+   N++GALEL+S MR   ++LD V ++IGLGACS  G I +G  +H
Sbjct: 243 NIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIH 302

Query: 112 GYAVHRCFDGFDIVKNALITMYSRCNDLRLAYLLFRS 2
             A+  CFDGFD V+NALITMYSRC DLR A +LF+S
Sbjct: 303 ASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKS 339


>ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/95 (58%), Positives = 72/95 (75%)
 Frame = -1

Query: 292 NTVTWNTITAGCLNEANYRGALELISHMRYRGVNLDSVTIVIGLGACSETGFITMGRELH 113
           N + WNTI  GCL+  N+RGAL+LIS MR   ++LD++ +V+GL ACS  G I +G+E+H
Sbjct: 282 NVIIWNTIAGGCLHSGNFRGALQLISQMR-TSIHLDAIAMVVGLNACSHIGAIKLGKEIH 340

Query: 112 GYAVHRCFDGFDIVKNALITMYSRCNDLRLAYLLF 8
           G+AV  CFD FD VKNALITMYSRC DL  A++LF
Sbjct: 341 GHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILF 375


>ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512271|gb|AES93894.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  121 bits (303), Expect = 7e-26
 Identities = 57/96 (59%), Positives = 70/96 (72%)
 Frame = -1

Query: 292 NTVTWNTITAGCLNEANYRGALELISHMRYRGVNLDSVTIVIGLGACSETGFITMGRELH 113
           N + WNTI  GCL+  N++GAL+L S MR   + LDSV +V+GL ACS  G + +G+E+H
Sbjct: 293 NIIIWNTIAGGCLHTGNFKGALKLFSQMR-AVIQLDSVAMVVGLNACSHIGAVKLGKEIH 351

Query: 112 GYAVHRCFDGFDIVKNALITMYSRCNDLRLAYLLFR 5
           G+AV  CFD FD VKN LITMYSRC DL  AYLLFR
Sbjct: 352 GHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFR 387


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  120 bits (301), Expect = 1e-25
 Identities = 56/96 (58%), Positives = 69/96 (71%)
 Frame = -1

Query: 292 NTVTWNTITAGCLNEANYRGALELISHMRYRGVNLDSVTIVIGLGACSETGFITMGRELH 113
           N + WNTI  G L   NY+GALEL+S MR  G +LDSV ++IGLGACS  G   +G+E+H
Sbjct: 256 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIH 315

Query: 112 GYAVHRCFDGFDIVKNALITMYSRCNDLRLAYLLFR 5
            +A+  CF   D VKNALITMYSRC DL+ AYLLF+
Sbjct: 316 SFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQ 351