BLASTX nr result
ID: Coptis24_contig00029907
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00029907 (280 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002517737.1| pentatricopeptide repeat-containing protein,... 125 3e-27 gb|ADE77505.1| unknown [Picea sitchensis] 89 3e-16 gb|ABR17838.1| unknown [Picea sitchensis] 89 3e-16 ref|NP_180924.1| pentatricopeptide repeat-containing protein [Ar... 86 2e-15 ref|XP_002879464.1| pentatricopeptide repeat-containing protein ... 85 5e-15 >ref|XP_002517737.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543135|gb|EEF44669.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 299 Score = 125 bits (315), Expect = 3e-27 Identities = 58/92 (63%), Positives = 78/92 (84%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 +LISGLA NS + AL FFE+M++EG + +V+TMVSVLS+CA++AAL+NG ++HGLVIK Sbjct: 140 SLISGLAQNSKESIALAFFERMRLEGAKVDVITMVSVLSICAELAALINGTKIHGLVIKY 199 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEM 277 GFE YLP+GNA +DMY+K G ME+ACLCF ++ Sbjct: 200 GFEFYLPVGNAIVDMYAKCGSMENACLCFKQL 231 >gb|ADE77505.1| unknown [Picea sitchensis] Length = 514 Score = 89.4 bits (220), Expect = 3e-16 Identities = 44/93 (47%), Positives = 64/93 (68%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+I+G A N G ++L F +M+ G++ + M SVLS CAD+AAL G+Q H V++ Sbjct: 112 AVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS 171 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 GF L + +G+A +DMY+KSG MEDAC F++MP Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMP 204 Score = 57.0 bits (136), Expect = 2e-06 Identities = 27/68 (39%), Positives = 43/68 (63%) Frame = +2 Query: 74 EGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGFELYLPIGNATLDMYSKSGRMED 253 +GV+ N T+ +V+ CA +A+L GKQ H +IK GFE + + A + MY++ G +ED Sbjct: 4 KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63 Query: 254 ACLCFNEM 277 A F++M Sbjct: 64 AGHVFDKM 71 >gb|ABR17838.1| unknown [Picea sitchensis] Length = 795 Score = 89.4 bits (220), Expect = 3e-16 Identities = 44/93 (47%), Positives = 60/93 (64%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+I G +LNS +AL FF +MQV G++ N +TMVSVL CA + AL G+Q+HG I+ Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS 351 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 GFE +GNA ++MY+K G + A F MP Sbjct: 352 GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384 Score = 73.6 bits (179), Expect = 2e-11 Identities = 37/93 (39%), Positives = 55/93 (59%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+I+G + N +AL F +MQV G++ N T+VSV+ VCA + AL GKQ+H I+ Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 G E + + N ++MY+K G + A F MP Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283 Score = 73.2 bits (178), Expect = 2e-11 Identities = 36/93 (38%), Positives = 54/93 (58%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+ISG + + +AL F +MQ +G++ + +VSVL CA AL GKQ+HG I+ Sbjct: 393 AIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS 452 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 GFE + +G +D+Y+K G + A F MP Sbjct: 453 GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485 Score = 57.0 bits (136), Expect = 2e-06 Identities = 31/91 (34%), Positives = 48/91 (52%) Frame = +2 Query: 8 ISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGF 187 I G N KAL + +MQ G+ + + +SV+ C + L G++VH +I GF Sbjct: 92 IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF 151 Query: 188 ELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 E + +G A MY+K G +E+A F+ MP Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMP 182 >ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana] gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 727 Score = 86.3 bits (212), Expect = 2e-15 Identities = 45/93 (48%), Positives = 56/93 (60%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 +LISG NSD +AL + +M+ G+ N TM SVL C+ +A L GKQVHG IK Sbjct: 393 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 452 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 GF L +PIG+A MYSK G +ED L F P Sbjct: 453 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 485 Score = 66.2 bits (160), Expect = 3e-09 Identities = 31/85 (36%), Positives = 54/85 (63%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+++G + N + +A+ F +M G++ + T+V VL+ C+D+ L GKQ+H ++K Sbjct: 292 AMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKL 351 Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256 GFE +L A +DMY+K+G + DA Sbjct: 352 GFERHLFATTALVDMYAKAGCLADA 376 >ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 713 Score = 85.1 bits (209), Expect = 5e-15 Identities = 44/93 (47%), Positives = 56/93 (60%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 +LISG NSD +AL + +M+ G+ N TM SVL C+ +A L GKQVHG IK Sbjct: 382 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 441 Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280 GF L +PIG+A MY+K G +ED L F P Sbjct: 442 GFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTP 474 Score = 68.9 bits (167), Expect = 4e-10 Identities = 32/85 (37%), Positives = 55/85 (64%) Frame = +2 Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181 A+++G + N + +A+ F +M G++ + T+V VL+ C+D+ LV GKQ+H ++K Sbjct: 281 AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKL 340 Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256 GFE +L A +DMY+K+G + DA Sbjct: 341 GFERHLFATTALVDMYAKAGCLADA 365