BLASTX nr result
ID: Coptis24_contig00029907
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00029907
(280 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002517737.1| pentatricopeptide repeat-containing protein,... 125 3e-27
gb|ADE77505.1| unknown [Picea sitchensis] 89 3e-16
gb|ABR17838.1| unknown [Picea sitchensis] 89 3e-16
ref|NP_180924.1| pentatricopeptide repeat-containing protein [Ar... 86 2e-15
ref|XP_002879464.1| pentatricopeptide repeat-containing protein ... 85 5e-15
>ref|XP_002517737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543135|gb|EEF44669.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 299
Score = 125 bits (315), Expect = 3e-27
Identities = 58/92 (63%), Positives = 78/92 (84%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
+LISGLA NS + AL FFE+M++EG + +V+TMVSVLS+CA++AAL+NG ++HGLVIK
Sbjct: 140 SLISGLAQNSKESIALAFFERMRLEGAKVDVITMVSVLSICAELAALINGTKIHGLVIKY 199
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEM 277
GFE YLP+GNA +DMY+K G ME+ACLCF ++
Sbjct: 200 GFEFYLPVGNAIVDMYAKCGSMENACLCFKQL 231
>gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 89.4 bits (220), Expect = 3e-16
Identities = 44/93 (47%), Positives = 64/93 (68%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+I+G A N G ++L F +M+ G++ + M SVLS CAD+AAL G+Q H V++
Sbjct: 112 AVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS 171
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
GF L + +G+A +DMY+KSG MEDAC F++MP
Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMP 204
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +2
Query: 74 EGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGFELYLPIGNATLDMYSKSGRMED 253
+GV+ N T+ +V+ CA +A+L GKQ H +IK GFE + + A + MY++ G +ED
Sbjct: 4 KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63
Query: 254 ACLCFNEM 277
A F++M
Sbjct: 64 AGHVFDKM 71
>gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 89.4 bits (220), Expect = 3e-16
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+I G +LNS +AL FF +MQV G++ N +TMVSVL CA + AL G+Q+HG I+
Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS 351
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
GFE +GNA ++MY+K G + A F MP
Sbjct: 352 GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384
Score = 73.6 bits (179), Expect = 2e-11
Identities = 37/93 (39%), Positives = 55/93 (59%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+I+G + N +AL F +MQV G++ N T+VSV+ VCA + AL GKQ+H I+
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
G E + + N ++MY+K G + A F MP
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283
Score = 73.2 bits (178), Expect = 2e-11
Identities = 36/93 (38%), Positives = 54/93 (58%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+ISG + + +AL F +MQ +G++ + +VSVL CA AL GKQ+HG I+
Sbjct: 393 AIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS 452
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
GFE + +G +D+Y+K G + A F MP
Sbjct: 453 GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/91 (34%), Positives = 48/91 (52%)
Frame = +2
Query: 8 ISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGF 187
I G N KAL + +MQ G+ + + +SV+ C + L G++VH +I GF
Sbjct: 92 IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF 151
Query: 188 ELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
E + +G A MY+K G +E+A F+ MP
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMP 182
>ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g33680 gi|1707007|gb|AAC69139.1| hypothetical protein
[Arabidopsis thaliana] gi|330253774|gb|AEC08868.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 727
Score = 86.3 bits (212), Expect = 2e-15
Identities = 45/93 (48%), Positives = 56/93 (60%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
+LISG NSD +AL + +M+ G+ N TM SVL C+ +A L GKQVHG IK
Sbjct: 393 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 452
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
GF L +PIG+A MYSK G +ED L F P
Sbjct: 453 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 485
Score = 66.2 bits (160), Expect = 3e-09
Identities = 31/85 (36%), Positives = 54/85 (63%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+++G + N + +A+ F +M G++ + T+V VL+ C+D+ L GKQ+H ++K
Sbjct: 292 AMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKL 351
Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256
GFE +L A +DMY+K+G + DA
Sbjct: 352 GFERHLFATTALVDMYAKAGCLADA 376
>ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297325303|gb|EFH55723.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 713
Score = 85.1 bits (209), Expect = 5e-15
Identities = 44/93 (47%), Positives = 56/93 (60%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
+LISG NSD +AL + +M+ G+ N TM SVL C+ +A L GKQVHG IK
Sbjct: 382 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 441
Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
GF L +PIG+A MY+K G +ED L F P
Sbjct: 442 GFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTP 474
Score = 68.9 bits (167), Expect = 4e-10
Identities = 32/85 (37%), Positives = 55/85 (64%)
Frame = +2
Query: 2 ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
A+++G + N + +A+ F +M G++ + T+V VL+ C+D+ LV GKQ+H ++K
Sbjct: 281 AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKL 340
Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256
GFE +L A +DMY+K+G + DA
Sbjct: 341 GFERHLFATTALVDMYAKAGCLADA 365