BLASTX nr result

ID: Coptis24_contig00029907 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029907
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517737.1| pentatricopeptide repeat-containing protein,...   125   3e-27
gb|ADE77505.1| unknown [Picea sitchensis]                              89   3e-16
gb|ABR17838.1| unknown [Picea sitchensis]                              89   3e-16
ref|NP_180924.1| pentatricopeptide repeat-containing protein [Ar...    86   2e-15
ref|XP_002879464.1| pentatricopeptide repeat-containing protein ...    85   5e-15

>ref|XP_002517737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543135|gb|EEF44669.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 299

 Score =  125 bits (315), Expect = 3e-27
 Identities = 58/92 (63%), Positives = 78/92 (84%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           +LISGLA NS  + AL FFE+M++EG + +V+TMVSVLS+CA++AAL+NG ++HGLVIK 
Sbjct: 140 SLISGLAQNSKESIALAFFERMRLEGAKVDVITMVSVLSICAELAALINGTKIHGLVIKY 199

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEM 277
           GFE YLP+GNA +DMY+K G ME+ACLCF ++
Sbjct: 200 GFEFYLPVGNAIVDMYAKCGSMENACLCFKQL 231


>gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/93 (47%), Positives = 64/93 (68%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+I+G A N  G ++L  F +M+  G++ +   M SVLS CAD+AAL  G+Q H  V++ 
Sbjct: 112 AVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQS 171

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           GF L + +G+A +DMY+KSG MEDAC  F++MP
Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMP 204



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 43/68 (63%)
 Frame = +2

Query: 74  EGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGFELYLPIGNATLDMYSKSGRMED 253
           +GV+ N  T+ +V+  CA +A+L  GKQ H  +IK GFE  + +  A + MY++ G +ED
Sbjct: 4   KGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLED 63

Query: 254 ACLCFNEM 277
           A   F++M
Sbjct: 64  AGHVFDKM 71


>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 44/93 (47%), Positives = 60/93 (64%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+I G +LNS   +AL FF +MQV G++ N +TMVSVL  CA + AL  G+Q+HG  I+ 
Sbjct: 292 AIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRS 351

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           GFE    +GNA ++MY+K G +  A   F  MP
Sbjct: 352 GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/93 (39%), Positives = 55/93 (59%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+I+G + N    +AL  F +MQV G++ N  T+VSV+ VCA + AL  GKQ+H   I+ 
Sbjct: 191 AIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS 250

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           G E  + + N  ++MY+K G +  A   F  MP
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMP 283



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/93 (38%), Positives = 54/93 (58%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+ISG + +    +AL  F +MQ +G++ +   +VSVL  CA   AL  GKQ+HG  I+ 
Sbjct: 393 AIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS 452

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           GFE  + +G   +D+Y+K G +  A   F  MP
Sbjct: 453 GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP 485



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/91 (34%), Positives = 48/91 (52%)
 Frame = +2

Query: 8   ISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKDGF 187
           I G   N    KAL  + +MQ  G+  + +  +SV+  C   + L  G++VH  +I  GF
Sbjct: 92  IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF 151

Query: 188 ELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           E  + +G A   MY+K G +E+A   F+ MP
Sbjct: 152 ESDVIVGTALASMYTKCGSLENARQVFDRMP 182


>ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101011|sp|P93005.1|PP181_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33680 gi|1707007|gb|AAC69139.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253774|gb|AEC08868.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 727

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/93 (48%), Positives = 56/93 (60%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           +LISG   NSD  +AL  + +M+  G+  N  TM SVL  C+ +A L  GKQVHG  IK 
Sbjct: 393 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 452

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           GF L +PIG+A   MYSK G +ED  L F   P
Sbjct: 453 GFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP 485



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/85 (36%), Positives = 54/85 (63%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+++G + N +  +A+  F +M   G++ +  T+V VL+ C+D+  L  GKQ+H  ++K 
Sbjct: 292 AMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKL 351

Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256
           GFE +L    A +DMY+K+G + DA
Sbjct: 352 GFERHLFATTALVDMYAKAGCLADA 376


>ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325303|gb|EFH55723.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 713

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/93 (47%), Positives = 56/93 (60%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           +LISG   NSD  +AL  + +M+  G+  N  TM SVL  C+ +A L  GKQVHG  IK 
Sbjct: 382 SLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKH 441

Query: 182 GFELYLPIGNATLDMYSKSGRMEDACLCFNEMP 280
           GF L +PIG+A   MY+K G +ED  L F   P
Sbjct: 442 GFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTP 474



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/85 (37%), Positives = 55/85 (64%)
 Frame = +2

Query: 2   ALISGLALNSDGAKALFFFEKMQVEGVRGNVMTMVSVLSVCADMAALVNGKQVHGLVIKD 181
           A+++G + N +  +A+  F +M   G++ +  T+V VL+ C+D+  LV GKQ+H  ++K 
Sbjct: 281 AMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKL 340

Query: 182 GFELYLPIGNATLDMYSKSGRMEDA 256
           GFE +L    A +DMY+K+G + DA
Sbjct: 341 GFERHLFATTALVDMYAKAGCLADA 365


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