BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029901
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306508.1| predicted protein [Populus trichocarpa] gi|2...   144   6e-33
ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|NP_178170.1| pentatricopeptide repeat-containing protein [Ar...   138   5e-31
ref|XP_002887822.1| pentatricopeptide repeat-containing protein ...   135   3e-30
ref|XP_003597983.1| Pentatricopeptide repeat-containing protein ...   134   1e-29

>ref|XP_002306508.1| predicted protein [Populus trichocarpa] gi|222855957|gb|EEE93504.1|
           predicted protein [Populus trichocarpa]
          Length = 439

 Score =  144 bits (364), Expect = 6e-33
 Identities = 63/109 (57%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
 Frame = +2

Query: 5   ETITSYSNDWKRAYEFFTWVETQVNFKHNVETYNKMIDVLGKFFEFDLAWEII----NNK 172
           +T++ Y+NDWKRA +FF WVET+  F+H  ETYN+MID+LGKFFEFDL+W++I    NN 
Sbjct: 51  QTLSCYNNDWKRALDFFNWVETESQFQHTTETYNRMIDILGKFFEFDLSWDLIQRMRNNP 110

Query: 173 MDAPDYTTFRILFKRYASAHMVNEAIDCFNNKLDEFNLKDDTSFGNLVD 319
              P++TTFR+LF RY SAH+VNEA+  + ++L EF LKD+TS+  LVD
Sbjct: 111 FSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKEFGLKDETSYCILVD 159


>ref|XP_004158824.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80550,
           mitochondrial-like [Cucumis sativus]
          Length = 450

 Score =  139 bits (351), Expect = 2e-31
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 4/110 (3%)
 Frame = +2

Query: 2   KETITSYSNDWKRAYEFFTWVETQVNFKHNVETYNKMIDVLGKFFEFDLAWEIINNKMD- 178
           +E + SY NDWKR+YEFF WVE++  F H  ETYN+M+D+LGKFFEFDL+W +IN     
Sbjct: 51  REALDSYCNDWKRSYEFFNWVESECKFDHTTETYNRMLDILGKFFEFDLSWVLINRMRQS 110

Query: 179 ---APDYTTFRILFKRYASAHMVNEAIDCFNNKLDEFNLKDDTSFGNLVD 319
              +PD+ TFRILFKRYA AH+V+EAI  +  +L EF L+D+TSF NL+D
Sbjct: 111 PSASPDHATFRILFKRYALAHLVSEAIAAY-ERLREFKLRDETSFCNLID 159


>ref|NP_178170.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264854|sp|Q9M8M3.1|PP136_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g80550, mitochondrial; Flags: Precursor
           gi|6730729|gb|AAF27119.1|AC018849_7 unknown protein;
           31926-33272 [Arabidopsis thaliana]
           gi|332198297|gb|AEE36418.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 448

 Score =  138 bits (347), Expect = 5e-31
 Identities = 61/109 (55%), Positives = 85/109 (77%), Gaps = 4/109 (3%)
 Frame = +2

Query: 5   ETITSYSNDWKRAYEFFTWVETQVNFKHNVETYNKMIDVLGKFFEFDLAWEIIN----NK 172
           E +T YSNDW++A EFF WVE +  F+H  ET+N++ID+LGK+FEF+++W +IN    N 
Sbjct: 52  EALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNT 111

Query: 173 MDAPDYTTFRILFKRYASAHMVNEAIDCFNNKLDEFNLKDDTSFGNLVD 319
              P++ TFRI+FKRY +AH+V EAID + +KLD+FNL+D+TSF NLVD
Sbjct: 112 ESVPNHVTFRIVFKRYVTAHLVQEAIDAY-DKLDDFNLRDETSFYNLVD 159


>ref|XP_002887822.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297333663|gb|EFH64081.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 407

 Score =  135 bits (340), Expect = 3e-30
 Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 4/109 (3%)
 Frame = +2

Query: 5   ETITSYSNDWKRAYEFFTWVETQVNFKHNVETYNKMIDVLGKFFEFDLAWEIIN----NK 172
           E ++ Y NDW++A EFF WVE +  F+H  ET+N+MID+LGK+FEF+  W +IN    N 
Sbjct: 12  EALSCYINDWQKALEFFNWVEKESGFRHTTETFNRMIDILGKYFEFETCWALINRMIGNP 71

Query: 173 MDAPDYTTFRILFKRYASAHMVNEAIDCFNNKLDEFNLKDDTSFGNLVD 319
              P++ TFRI+FKRY +AH+V EAID + +KLD+FNL+DDTSF NLVD
Sbjct: 72  ESLPNHVTFRIVFKRYVTAHLVQEAIDAY-DKLDDFNLRDDTSFYNLVD 119


>ref|XP_003597983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487031|gb|AES68234.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  134 bits (336), Expect = 1e-29
 Identities = 60/110 (54%), Positives = 84/110 (76%), Gaps = 4/110 (3%)
 Frame = +2

Query: 2   KETITSYSNDWKRAYEFFTWVETQVNFKHNVETYNKMIDVLGKFFEFDLAWEIIN----N 169
           + T+TS++ND+KRA EFF WVET+  F+H+ ETYN ++D+LGKFFEF   W +I+    N
Sbjct: 80  RATLTSFNNDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQN 139

Query: 170 KMDAPDYTTFRILFKRYASAHMVNEAIDCFNNKLDEFNLKDDTSFGNLVD 319
               P++TTFR++FKRY SAH V +A++ F  +L+EFNLKD+TSF NL+D
Sbjct: 140 PHSLPNHTTFRVMFKRYVSAHCVQDAVNTF-QRLNEFNLKDETSFSNLID 188