BLASTX nr result

ID: Coptis24_contig00029853 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029853
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides]      127   3e-41
ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|2...   121   2e-39
ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|2...   120   5e-38
ref|XP_003626787.1| 1-aminocyclopropane-1-carboxylate oxidase-li...   124   5e-38
ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclo...   122   3e-37

>gb|ABK96309.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 370

 Score =  127 bits (319), Expect(2) = 3e-41
 Identities = 55/92 (59%), Positives = 78/92 (84%)
 Frame = +3

Query: 126 VQVRHKDHWVDVHPLPGSLVVNIGDLLQIASNDKFKSIEHRVLANHVGPRVSVARFLTPR 305
           +Q+ H++HW+DV P+ G+LVVNIGDLLQ+ SNDKFKS+EHRV+ANH+GPRVSVA F TP 
Sbjct: 260 LQIFHQNHWIDVPPVHGALVVNIGDLLQLISNDKFKSVEHRVVANHIGPRVSVASFFTPH 319

Query: 306 FDMATKPFGPIKELISDESRPVYREISMNEYL 401
              +T+ +GPIKEL+S+E+ P+Y EI++ +++
Sbjct: 320 LYPSTRLYGPIKELLSEENPPIYCEITVKDFI 351



 Score = 66.2 bits (160), Expect(2) = 3e-41
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = +1

Query: 7   LVSHYYPACPEPELVLGNAKHTDPAFFAILLQNDIDGLQ 123
           L+SHYYPACPEPEL +G  KH+DP F  ILLQ+DI GLQ
Sbjct: 223 LLSHYYPACPEPELAMGTTKHSDPDFLTILLQDDIGGLQ 261


>ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|222864751|gb|EEF01882.1|
           predicted protein [Populus trichocarpa]
          Length = 374

 Score =  121 bits (304), Expect(2) = 2e-39
 Identities = 55/96 (57%), Positives = 78/96 (81%), Gaps = 4/96 (4%)
 Frame = +3

Query: 126 VQVRHKDHWVDVHPLPGSLVVNIGDLLQ----IASNDKFKSIEHRVLANHVGPRVSVARF 293
           +Q+ H++HW+DV P+ G+LVVNIGDLLQ    + SNDKFKS+EHRV+ANH+GPRVSVA F
Sbjct: 260 LQIFHQNHWIDVPPVHGALVVNIGDLLQASTVLISNDKFKSVEHRVVANHIGPRVSVASF 319

Query: 294 LTPRFDMATKPFGPIKELISDESRPVYREISMNEYL 401
            TP    +T+ +GPIKEL+S+E+ P+Y EI++ +++
Sbjct: 320 FTPHLYPSTRLYGPIKELLSEENPPIYCEITVKDFI 355



 Score = 66.2 bits (160), Expect(2) = 2e-39
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = +1

Query: 7   LVSHYYPACPEPELVLGNAKHTDPAFFAILLQNDIDGLQ 123
           L+SHYYPACPEPEL +G  KH+DP F  ILLQ+DI GLQ
Sbjct: 223 LLSHYYPACPEPELAMGTTKHSDPDFLTILLQDDIGGLQ 261


>ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|222864753|gb|EEF01884.1|
           predicted protein [Populus trichocarpa]
          Length = 379

 Score =  120 bits (302), Expect(2) = 5e-38
 Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 7/99 (7%)
 Frame = +3

Query: 126 VQVRHKDHWVDVHPLPGSLVVNIGDLLQ-------IASNDKFKSIEHRVLANHVGPRVSV 284
           +Q+ H+D WVD+ P+PG+LV+NIGDL+Q       + SNDKFKS+EHRVLAN VGPR+SV
Sbjct: 262 LQMLHQDQWVDIPPVPGALVINIGDLMQASFSFISLISNDKFKSVEHRVLANRVGPRISV 321

Query: 285 ARFLTPRFDMATKPFGPIKELISDESRPVYREISMNEYL 401
           A F +  F  ++K +GPIKEL+S+ + P+YRE ++NEYL
Sbjct: 322 ACFFSTSFQPSSKLYGPIKELLSEYNPPIYRETTVNEYL 360



 Score = 62.0 bits (149), Expect(2) = 5e-38
 Identities = 26/39 (66%), Positives = 31/39 (79%)
 Frame = +1

Query: 7   LVSHYYPACPEPELVLGNAKHTDPAFFAILLQNDIDGLQ 123
           L+SHYYPACPEPEL LG +KH+D  F  +LLQ+ I GLQ
Sbjct: 225 LISHYYPACPEPELTLGTSKHSDNDFLTVLLQDQIGGLQ 263


>ref|XP_003626787.1| 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago
           truncatula] gi|355520809|gb|AET01263.1|
           1-aminocyclopropane-1-carboxylate oxidase-like protein
           [Medicago truncatula]
          Length = 364

 Score =  124 bits (310), Expect(2) = 5e-38
 Identities = 55/92 (59%), Positives = 77/92 (83%)
 Frame = +3

Query: 126 VQVRHKDHWVDVHPLPGSLVVNIGDLLQIASNDKFKSIEHRVLANHVGPRVSVARFLTPR 305
           +QV  ++ WVDV P+PG+LV+NIGDLLQ+ +NDKFKS+EHRV+ANHVGPRVSVA F +  
Sbjct: 251 LQVLRENSWVDVSPVPGALVINIGDLLQLITNDKFKSVEHRVVANHVGPRVSVASFYSTS 310

Query: 306 FDMATKPFGPIKELISDESRPVYREISMNEYL 401
           F  +TK +GPIKEL+S+++ P YRE ++++Y+
Sbjct: 311 FQPSTKLYGPIKELVSEDNPPKYRETTVHDYV 342



 Score = 58.9 bits (141), Expect(2) = 5e-38
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +1

Query: 7   LVSHYYPACPEPELVLGNAKHTDPAFFAILLQNDIDGLQ 123
           LV HYYP+CPEPEL LG  KHTD  F  +LLQ+ I GLQ
Sbjct: 214 LVCHYYPSCPEPELTLGITKHTDNDFITVLLQDHIGGLQ 252


>ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate
           oxidase homolog 1-like [Glycine max]
          Length = 374

 Score =  122 bits (305), Expect(2) = 3e-37
 Identities = 58/92 (63%), Positives = 74/92 (80%)
 Frame = +3

Query: 126 VQVRHKDHWVDVHPLPGSLVVNIGDLLQIASNDKFKSIEHRVLANHVGPRVSVARFLTPR 305
           +QV   + WVDV P+PG+LVVNIGDLLQ+ SNDKFKS+EHRVLAN +GPRVSVA F T  
Sbjct: 262 LQVLSHNGWVDVPPVPGALVVNIGDLLQLISNDKFKSVEHRVLANRIGPRVSVACFFTIH 321

Query: 306 FDMATKPFGPIKELISDESRPVYREISMNEYL 401
           F  +T+ +GPIKEL+S+E  PVYRE S+ +++
Sbjct: 322 FYPSTRIYGPIKELLSEEXPPVYRETSLKDFI 353



 Score = 58.5 bits (140), Expect(2) = 3e-37
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +1

Query: 4   TLVSHYYPACPEPELVLGNAKHTDPAFFAILLQNDIDGLQ 123
           +++ HYYP+CPEPEL +G  +H+DP F  ILLQ+ I GLQ
Sbjct: 224 SILFHYYPSCPEPELTMGTTRHSDPDFLTILLQDHIGGLQ 263


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